PartSeg.common_backend package¶
Module contents¶
This module contains non gui Qt based components
Submodules¶
PartSeg.common_backend.abstract_class module¶
- class PartSeg.common_backend.abstract_class.QtMeta(name, bases, namespace, **kwargs)[source]¶
Bases:
sip.wrappertype
,abc.ABCMeta
Class to solve metaclass conflict for multiple inheritance:
TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclass of all its bases
>>> class A: ... pass ... >>> class Test(QObject, A, metaclass=QtMeta): ... pass
PartSeg.common_backend.base_argparser module¶
- class PartSeg.common_backend.base_argparser.CustomParser(*args, **kwargs)[source]¶
Bases:
argparse.ArgumentParser
Argument parser with set of predefined flags:
--no_report
- disable error reporting, still showing dialog with information. Setstate_store.report_errors
.--no_dialog
- disable error reporting and showing dialog. Exceptions will be printed on stderr. Setstate_store.show_error_dialog
.--no_update
- disable check for updates on application startup
--save_suffix
- add special suffix to directory contains saved state. designed to allow separate projects.Set
state_store.save_suffix
.
--save_directory
- set custom save directory. default can be previewed in Help > State directoryfrom PartSeg main menu, Set
state_store.save_folder
.
--inner_plugins
- designed to hide part plugin from default start.
--develop
– for developer purpose. Allow to reload part of Program without restarting. May be unstable.Set
state_store.develop
. Base on thisPartSeg.common_gui.advanced_tabs.AdvancedWindow
constructor add developer tab.
- parse_args(args=None, namespace=None)[source]¶
overload of
argparse.ArgumentParser.parse_args()
. Set flags like described in class documentation.
- PartSeg.common_backend.base_argparser.proper_path(val)[source]¶
Check if val is proper path in current system
- Raises
argparse.ArgumentTypeError – on validation error
- PartSeg.common_backend.base_argparser.proper_suffix(val)[source]¶
check if val contains only alphanumeric characters
- Raises
argparse.ArgumentTypeError – on validation error
PartSeg.common_backend.base_settings module¶
- class PartSeg.common_backend.base_settings.BaseSettings(json_path, profile_name='default')[source]¶
Bases:
PartSeg.common_backend.base_settings.ViewSettings
- Variables
json_folder_path – default location for saving/loading settings data
last_executed_algorithm – name of last executed algorithm.
save_locations_keys – list of names of distinct save location. location are stored in “io”
- get(key_path, default=None)[source]¶
Function for getting general state (not visualization). This is accessor to
get()
of inner variable.- Parameters
key_path (
str
) – dot separated pathdefault – default value if key is missed
- get_algorithm(key_path, default=None)[source]¶
Function for getting last algorithm used information. This is accessor to
get()
of inner variable.- Parameters
key_path (
str
) – dot separated pathdefault – default value if key is missed
- get_path_history()[source]¶
return list containing last 10 elements added with
add_path_history()
and last opened in each category formsave_location_keys
- json_encoder_class¶
- static load_metadata()¶
- property mask¶
- mask_changed¶
- property points¶
- points_changed¶
- set(key_path, value)[source]¶
function for saving general state (not visualization). This is accessor to
set()
of inner variable.- Parameters
key_path (
str
) – dot separated pathvalue – value to store. The value need to be json serializable.
- class PartSeg.common_backend.base_settings.ColormapDict(editable_items)[source]¶
Bases:
PartSeg.common_backend.partially_const_dict.PartiallyConstDict
[napari.utils.colormaps.colormap.Colormap
]Dict for mixing custom colormap with predefined ones
- property colormap_added¶
Signal that colormap is added to dict
- property colormap_removed¶
Signal that colormap is removed form dict
- const_item_dict: ClassVar[Dict[str, Any]] = {'I Blue': Colormap(colors=array([[1. , 1. , 1. , 1. ], [0. , 0.2, 0.8, 1. ]], dtype=float32), name='I Blue', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Blue_reversed': Colormap(colors=array([[0. , 0.2, 0.8, 1. ], [1. , 1. , 1. , 1. ]], dtype=float32), name='custom', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Bordeaux': Colormap(colors=array([[1. , 1. , 1. , 1. ], [0.8, 0. , 0.2, 1. ]], dtype=float32), name='I Bordeaux', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Bordeaux_reversed': Colormap(colors=array([[0.8, 0. , 0.2, 1. ], [1. , 1. , 1. , 1. ]], dtype=float32), name='custom', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Forest': Colormap(colors=array([[1. , 1. , 1. , 1. ], [0. , 0.6, 0. , 1. ]], dtype=float32), name='I Forest', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Forest_reversed': Colormap(colors=array([[0. , 0.6, 0. , 1. ], [1. , 1. , 1. , 1. ]], dtype=float32), name='custom', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Orange': Colormap(colors=array([[1. , 1. , 1. , 1. ], [1. , 0.45882353, 0. , 1. ]], dtype=float32), name='I Orange', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Orange_reversed': Colormap(colors=array([[1. , 0.45882353, 0. , 1. ], [1. , 1. , 1. , 1. ]], dtype=float32), name='custom', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Purple': Colormap(colors=array([[1. , 1. , 1. , 1. ], [0.45882353, 0. , 1. , 1. ]], dtype=float32), name='I Purple', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'I Purple_reversed': Colormap(colors=array([[0.45882353, 0. , 1. , 1. ], [1. , 1. , 1. , 1. ]], dtype=float32), name='custom', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'PiYG': Colormap(colors=array([[0.5568628 , 0.00392157, 0.32156864, 1. ], [0.565321 , 0.00792003, 0.32818148, 1. ], [0.57377934, 0.01191849, 0.3347943 , 1. ], ..., [0.16462898, 0.40630525, 0.10049981, 1. ], [0.15878509, 0.39923108, 0.09926951, 1. ], [0.15294118, 0.39215687, 0.09803922, 1. ]], dtype=float32), name='PiYG', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0. , 0.00392157, 0.00784314, 0.01176471, 0.01568628, 0.01960784, 0.02352941, 0.02745098, 0.03137255, 0.03529412, 0.03921569, 0.04313726, 0.04705882, 0.05098039, 0.05490196, 0.05882353, 0.0627451 , 0.06666667, 0.07058824, 0.07450981, 0.07843138, 0.08235294, 0.08627451, 0.09019608, 0.09411765, 0.09803922, 0.10196079, 0.10588235, 0.10980392, 0.11372549, 0.11764706, 0.12156863, 0.1254902 , 0.12941177, 0.13333334, 0.13725491, 0.14117648, 0.14509805, 0.14901961, 0.15294118, 0.15686275, 0.16078432, 0.16470589, 0.16862746, 0.17254902, 0.1764706 , 0.18039216, 0.18431373, 0.1882353 , 0.19215687, 0.19607843, 0.2 , 0.20392157, 0.20784314, 0.21176471, 0.21568628, 0.21960784, 0.22352941, 0.22745098, 0.23137255, 0.23529412, 0.23921569, 0.24313726, 0.24705882, 0.2509804 , 0.25490198, 0.25882354, 0.2627451 , 0.26666668, 0.27058825, 0.27450982, 0.2784314 , 0.28235295, 0.28627452, 0.2901961 , 0.29411766, 0.29803923, 0.3019608 , 0.30588236, 0.30980393, 0.3137255 , 0.31764707, 0.32156864, 0.3254902 , 0.32941177, 0.33333334, 0.3372549 , 0.34117648, 0.34509805, 0.34901962, 0.3529412 , 0.35686275, 0.36078432, 0.3647059 , 0.36862746, 0.37254903, 0.3764706 , 0.38039216, 0.38431373, 0.3882353 , 0.39215687, 0.39607844, 0.4 , 0.40392157, 0.40784314, 0.4117647 , 0.41568628, 0.41960785, 0.42352942, 0.42745098, 0.43137255, 0.43529412, 0.4392157 , 0.44313726, 0.44705883, 0.4509804 , 0.45490196, 0.45882353, 0.4627451 , 0.46666667, 0.47058824, 0.4745098 , 0.47843137, 0.48235294, 0.4862745 , 0.49019608, 0.49411765, 0.49803922, 0.5019608 , 0.5058824 , 0.50980395, 0.5137255 , 0.5176471 , 0.52156866, 0.5254902 , 0.5294118 , 0.53333336, 0.5372549 , 0.5411765 , 0.54509807, 0.54901963, 0.5529412 , 0.5568628 , 0.56078434, 0.5647059 , 0.5686275 , 0.57254905, 0.5764706 , 0.5803922 , 0.58431375, 0.5882353 , 0.5921569 , 0.59607846, 0.6 , 0.6039216 , 0.60784316, 0.6117647 , 0.6156863 , 0.61960787, 0.62352943, 0.627451 , 0.6313726 , 0.63529414, 0.6392157 , 0.6431373 , 0.64705884, 0.6509804 , 0.654902 , 0.65882355, 0.6627451 , 0.6666667 , 0.67058825, 0.6745098 , 0.6784314 , 0.68235296, 0.6862745 , 0.6901961 , 0.69411767, 0.69803923, 0.7019608 , 0.7058824 , 0.70980394, 0.7137255 , 0.7176471 , 0.72156864, 0.7254902 , 0.7294118 , 0.73333335, 0.7372549 , 0.7411765 , 0.74509805, 0.7490196 , 0.7529412 , 0.75686276, 0.7607843 , 0.7647059 , 0.76862746, 0.77254903, 0.7764706 , 0.78039217, 0.78431374, 0.7882353 , 0.7921569 , 0.79607844, 0.8 , 0.8039216 , 0.80784315, 0.8117647 , 0.8156863 , 0.81960785, 0.8235294 , 0.827451 , 0.83137256, 0.8352941 , 0.8392157 , 0.84313726, 0.84705883, 0.8509804 , 0.85490197, 0.85882354, 0.8627451 , 0.8666667 , 0.87058824, 0.8745098 , 0.8784314 , 0.88235295, 0.8862745 , 0.8901961 , 0.89411765, 0.8980392 , 0.9019608 , 0.90588236, 0.9098039 , 0.9137255 , 0.91764706, 0.92156863, 0.9254902 , 0.92941177, 0.93333334, 0.9372549 , 0.9411765 , 0.94509804, 0.9490196 , 0.9529412 , 0.95686275, 0.9607843 , 0.9647059 , 0.96862745, 0.972549 , 0.9764706 , 0.98039216, 0.9843137 , 0.9882353 , 0.99215686, 0.99607843, 1. ], dtype=float32)), 'PiYG_reversed': Colormap(colors=array([[0.15294118, 0.39215687, 0.09803922, 1. ], [0.15878509, 0.39923108, 0.09926951, 1. ], [0.16462898, 0.40630525, 0.10049981, 1. ], ..., [0.57377934, 0.01191849, 0.3347943 , 1. ], [0.565321 , 0.00792003, 0.32818148, 1. ], [0.5568628 , 0.00392157, 0.32156864, 1. ]], dtype=float32), name='custom', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0. , 0.00392157, 0.00784314, 0.01176471, 0.01568627, 0.01960784, 0.02352941, 0.02745098, 0.03137255, 0.03529412, 0.03921568, 0.04313725, 0.04705882, 0.05098039, 0.05490196, 0.05882353, 0.06274509, 0.06666666, 0.07058823, 0.0745098 , 0.07843137, 0.08235294, 0.0862745 , 0.09019607, 0.09411764, 0.09803921, 0.10196078, 0.10588235, 0.10980392, 0.11372548, 0.11764705, 0.12156862, 0.12549019, 0.12941176, 0.13333333, 0.1372549 , 0.14117646, 0.14509803, 0.1490196 , 0.15294117, 0.15686274, 0.1607843 , 0.16470587, 0.16862744, 0.17254901, 0.17647058, 0.18039215, 0.18431371, 0.18823528, 0.19215685, 0.19607842, 0.19999999, 0.20392156, 0.20784312, 0.2117647 , 0.21568626, 0.21960783, 0.2235294 , 0.22745097, 0.23137254, 0.2352941 , 0.23921567, 0.24313724, 0.24705881, 0.25098038, 0.25490195, 0.2588235 , 0.26274508, 0.26666665, 0.27058822, 0.2745098 , 0.27843136, 0.28235292, 0.2862745 , 0.29019606, 0.29411763, 0.2980392 , 0.30196077, 0.30588233, 0.3098039 , 0.31372547, 0.31764704, 0.3215686 , 0.32549018, 0.32941175, 0.3333333 , 0.33725488, 0.34117645, 0.34509802, 0.3490196 , 0.35294116, 0.35686272, 0.3607843 , 0.36470586, 0.36862743, 0.372549 , 0.37647057, 0.38039213, 0.3843137 , 0.38823527, 0.39215684, 0.3960784 , 0.39999998, 0.40392154, 0.4078431 , 0.41176468, 0.41568625, 0.41960782, 0.4235294 , 0.42745095, 0.43137252, 0.4352941 , 0.43921566, 0.44313723, 0.4470588 , 0.45098037, 0.45490193, 0.4588235 , 0.46274507, 0.46666664, 0.4705882 , 0.47450978, 0.47843134, 0.4823529 , 0.48627448, 0.49019605, 0.49411762, 0.4980392 , 0.50196075, 0.5058824 , 0.5098039 , 0.5137255 , 0.517647 , 0.52156866, 0.52549016, 0.5294118 , 0.5333333 , 0.5372549 , 0.54117644, 0.54509807, 0.5490196 , 0.5529412 , 0.5568627 , 0.56078434, 0.56470585, 0.5686275 , 0.572549 , 0.5764706 , 0.5803921 , 0.58431375, 0.58823526, 0.5921569 , 0.5960784 , 0.6 , 0.60392153, 0.60784316, 0.61176467, 0.6156863 , 0.6196078 , 0.62352943, 0.62745094, 0.6313726 , 0.6352941 , 0.6392157 , 0.6431372 , 0.64705884, 0.65098035, 0.654902 , 0.6588235 , 0.6627451 , 0.6666666 , 0.67058825, 0.67450976, 0.6784314 , 0.6823529 , 0.6862745 , 0.69019604, 0.69411767, 0.6980392 , 0.7019608 , 0.7058823 , 0.70980394, 0.71372545, 0.7176471 , 0.7215686 , 0.7254902 , 0.7294117 , 0.73333335, 0.73725486, 0.7411765 , 0.745098 , 0.7490196 , 0.7529412 , 0.75686276, 0.7607843 , 0.7647059 , 0.76862746, 0.77254903, 0.7764706 , 0.78039217, 0.78431374, 0.7882353 , 0.7921569 , 0.79607844, 0.8 , 0.8039216 , 0.80784315, 0.8117647 , 0.8156863 , 0.81960785, 0.8235294 , 0.827451 , 0.83137256, 0.8352941 , 0.8392157 , 0.84313726, 0.84705883, 0.8509804 , 0.85490197, 0.85882354, 0.8627451 , 0.8666667 , 0.87058824, 0.8745098 , 0.8784314 , 0.88235295, 0.8862745 , 0.8901961 , 0.89411765, 0.8980392 , 0.9019608 , 0.90588236, 0.9098039 , 0.9137255 , 0.91764706, 0.92156863, 0.9254902 , 0.92941177, 0.93333334, 0.9372549 , 0.9411765 , 0.94509804, 0.9490196 , 0.9529412 , 0.95686275, 0.9607843 , 0.9647059 , 0.96862745, 0.972549 , 0.9764706 , 0.98039216, 0.9843137 , 0.9882353 , 0.99215686, 0.99607843, 1. ], dtype=float32)), 'blue': Colormap(colors=array([[0., 0., 0., 1.], [0., 0., 1., 1.]], dtype=float32), name='blue', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'blue_reversed': Colormap(colors=array([[0., 0., 1., 1.], [0., 0., 0., 1.]], dtype=float32), name='custom', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'bop blue': Colormap(colors=array([[0. , 0. , 0. , 1. ], [0. , 0. , 0. , 1. ], [0. , 0.00392157, 0.00392157, 1. ], ..., [0.12156863, 0.6666667 , 0.9607843 , 1. ], [0.12156863, 0.67058825, 0.9647059 , 1. ], [0.1254902 , 0.6784314 , 0.972549 , 1. ]], dtype=float32), name='bop blue', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0. , 0.00392157, 0.00784314, 0.01176471, 0.01568628, 0.01960784, 0.02352941, 0.02745098, 0.03137255, 0.03529412, 0.03921569, 0.04313726, 0.04705882, 0.05098039, 0.05490196, 0.05882353, 0.0627451 , 0.06666667, 0.07058824, 0.07450981, 0.07843138, 0.08235294, 0.08627451, 0.09019608, 0.09411765, 0.09803922, 0.10196079, 0.10588235, 0.10980392, 0.11372549, 0.11764706, 0.12156863, 0.1254902 , 0.12941177, 0.13333334, 0.13725491, 0.14117648, 0.14509805, 0.14901961, 0.15294118, 0.15686275, 0.16078432, 0.16470589, 0.16862746, 0.17254902, 0.1764706 , 0.18039216, 0.18431373, 0.1882353 , 0.19215687, 0.19607843, 0.2 , 0.20392157, 0.20784314, 0.21176471, 0.21568628, 0.21960784, 0.22352941, 0.22745098, 0.23137255, 0.23529412, 0.23921569, 0.24313726, 0.24705882, 0.2509804 , 0.25490198, 0.25882354, 0.2627451 , 0.26666668, 0.27058825, 0.27450982, 0.2784314 , 0.28235295, 0.28627452, 0.2901961 , 0.29411766, 0.29803923, 0.3019608 , 0.30588236, 0.30980393, 0.3137255 , 0.31764707, 0.32156864, 0.3254902 , 0.32941177, 0.33333334, 0.3372549 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0., 0., 1.], [1., 1., 0., 1.]], dtype=float32), name='yellow', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'yellow_reversed': Colormap(colors=array([[1., 1., 0., 1.], [0., 0., 0., 1.]], dtype=float32), name='custom', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32))}¶
Dict with non removable elements
- class PartSeg.common_backend.base_settings.ImageSettings[source]¶
Bases:
QObject
Base class for all PartSeg settings. Keeps information about current Image.
- property additional_layers: Dict[str, PartSegCore.project_info.AdditionalLayerDescription]¶
- Return type
- additional_layers_changed¶
- property channels¶
- property full_segmentation¶
- property has_channels¶
- property image¶
- image_changed(Image)¶
- image_channel_count_changed(int)¶
- property image_path¶
- image_path_changed(str)¶
- property image_shape¶
- property image_spacing¶
Image.spacing()
proxy
- image_spacing_changed¶
- property noise_remove_image_part¶
- property roi: numpy.ndarray¶
current roi
- Return type
- roi_clean¶
- property roi_info: PartSegCore.roi_info.ROIInfo¶
- Return type
- property segmentation: numpy.ndarray¶
current roi
- Return type
- property segmentation_info: PartSegCore.roi_info.ROIInfo¶
- Return type
- property sizes¶
- class PartSeg.common_backend.base_settings.LabelColorDict(editable_items)[source]¶
Bases:
PartSeg.common_backend.partially_const_dict.PartiallyConstDict
[list
]Dict for mixing custom label colors with predefined ones`
- const_item_dict: ClassVar[Dict[str, Any]] = {'default': [[0, 205, 0], [0, 0, 255], [0, 255, 255], [255, 0, 255], [255, 127, 0], [0, 100, 0], [138, 43, 226], [139, 35, 35], [0, 0, 128], [139, 139, 0], [255, 62, 150], [139, 76, 57], [0, 134, 139], [205, 104, 57], [191, 62, 255], [0, 139, 69], [199, 21, 133], [205, 55, 0], [32, 178, 170], [106, 90, 205], [255, 20, 147], [69, 139, 116], [72, 118, 255], [205, 79, 57], [0, 0, 205], [139, 34, 82], [139, 0, 139], [238, 130, 238], [139, 0, 0], [255, 0, 0]]}¶
Non removable items for this dict. Current value is
default_label_dict
- class PartSeg.common_backend.base_settings.SaveSettingsDescription(file_name, values)[source]¶
Bases:
NamedTuple
- exception PartSeg.common_backend.base_settings.SwapTimeStackException[source]¶
Bases:
Exception
Exception which inform that current image shape is not supported, but can be if time and stack axes were swapped
- exception PartSeg.common_backend.base_settings.TimeAndStackException[source]¶
Bases:
Exception
Exception which inform that current image has both time and stack dat which is not supported
- class PartSeg.common_backend.base_settings.ViewSettings[source]¶
Bases:
PartSeg.common_backend.base_settings.ImageSettings
- property available_colormaps¶
- property chosen_colormap¶
Sequence of selected colormap to be available in dropdown
- colormap_changes¶
- property current_labels¶
Current labels scheme for marking ROI
- get_from_profile(key_path, default=None)[source]¶
Function for getting information used in visualization. This is accessor to
get()
of inner variable.- Parameters
key_path – dot separated path
default – default value if key is missed
- property label_colors¶
- labels_changed¶
- profile_data_changed(str, object)¶
Signal about changes in stored data (set with set_in_profile)
- set_in_profile(key_path, value)[source]¶
Function for saving information used in visualization. This is accessor to
set()
of inner variable.- Parameters
key_path – dot separated path
value – value to store. The value need to be json serializable.
- property style_sheet¶
- property theme¶
Theme as structure.
- theme_changed¶
PartSeg.common_backend.except_hook module¶
- PartSeg.common_backend.except_hook.my_excepthook(type_, value, trace_back)[source]¶
Custom excepthook. Close application on
KeyboardInterrupt
.If
PartSeg.state_store.always_report
is set then just sent report using sentry. otherwise show dialog with information about error and ask user if he wants to send report usingshow_error()
.
- PartSeg.common_backend.except_hook.show_error(error=None)[source]¶
For
SegmentationLimitException
andTiffFileException
show dialog with information about problem.For other exceptions show
ErrorDialog
dialog with information about error that allow to report it.- Parameters
error – exception to show
- PartSeg.common_backend.except_hook.show_warning(header=None, text=None, exception=None)[source]¶
Show warning
QMessageBox
This function is to ensure creation warning dialog in main thread.
PartSeg.common_backend.load_backup module¶
PartSeg.common_backend.partially_const_dict module¶
- class PartSeg.common_backend.partially_const_dict.PartiallyConstDict(editable_items)[source]¶
Base class for creating dict to mixin predefined and user defined variables.
- item_added(object)¶
Signal with item added to dict
- item_removed(object)¶
Signal with item remove fom dict
PartSeg.common_backend.progress_thread module¶
- class PartSeg.common_backend.progress_thread.ExecuteFunctionThread(fun, args=None, kwargs=None)[source]¶
Bases:
PartSeg.common_backend.progress_thread.ProgressTread
Generic Thread to execute
PartSeg.common_backend.segmentation_thread module¶
- class PartSeg.common_backend.segmentation_thread.SegmentationThread(algorithm)[source]¶
Bases:
QThread
Method to run calculation task in separated Thread. This allows to not freeze main window. To get info if calculation is done connect to
finished
.- exception_occurred(Exception)¶
Signal emitted when some exception occur during calculation.
- execution_done(ROIExtractionResult)¶
Signal contains result of segmentation algorithm. Emitted if calculation ends without exception and
SegmentationAlgorithm.calculation_run()
return not None result.
- finished_task()[source]¶
Called on calculation finished. Check if cache is not empty. In such case start calculation again with new parameters.
- progress_signal(str, int)¶
Signal with information about progress. This is proxy for
SegmentationAlgorithm.calculation_run()
report_fun parameter`
- set_image(image)[source]¶
check if calculation is running. If yes then cache parameters until it finish, otherwise call
SegmentationAlgorithm.set_image()
:param image: image to be set
- set_mask(mask)[source]¶
check if calculation is running. If yes then cache parameters until it finish, otherwise call
SegmentationAlgorithm.set_mask()
:param mask: mask to be set