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PartSeg 0.15.2 documentation
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A
add_calculation() (PartSegCore.analysis.batch_processing.batch_backend.CalculationManager method)
add_color() (PartSeg.common_gui.colormap_creator.ColormapEdit method)
add_data_part() (PartSegCore.analysis.batch_processing.batch_backend.DataWriter method)
(PartSegCore.analysis.batch_processing.batch_backend.FileData method)
add_hide_element() (PartSeg.common_gui.collapse_checkbox.CollapseCheckbox method)
add_history_element() (PartSeg.common_backend.base_settings.BaseSettings method)
add_labels() (in module PartSegCore.color_image)
add_last_files() (PartSeg.common_backend.base_settings.BaseSettings method)
add_last_files_multiple() (PartSeg.common_backend.base_settings.BaseSettings method)
add_load_files_history() (PartSeg.common_backend.base_settings.BaseSettings method)
add_node (PartSegCore.analysis.calculation_plan.PlanChanges attribute)
add_path_history() (PartSeg.common_backend.base_settings.BaseSettings method)
add_result() (PartSegCore.analysis.batch_processing.batch_backend.DataWriter method)
add_work() (PartSegCore.analysis.batch_processing.parallel_backend.BatchManager method)
additional_layers (PartSeg.common_backend.base_settings.ImageSettings property)
additional_layers_changed (PartSeg.common_backend.base_settings.ImageSettings attribute)
AdditionalLayerDescription (class in PartSegCore.project_info)
AddRegisterMeta (class in PartSegCore.algorithm_describe_base)
AdvancedWindow (class in PartSeg.common_gui.advanced_tabs)
algorithm (PartSegCore.algorithm_describe_base.ROIExtractionProfile attribute)
(PartSegCore.analysis.calculation_plan.Save attribute)
algorithm() (PartSegCore.algorithm_describe_base.AlgorithmSelection method)
(PartSegCore.segmentation.watershed.WatershedSelection method)
algorithm_changed (PartSeg.common_backend.base_settings.BaseSettings attribute)
AlgorithmChoose (class in PartSeg.common_gui.algorithms_description)
AlgorithmChooseBase (class in PartSeg.common_gui.algorithms_description)
AlgorithmDescribeBase (class in PartSegCore.algorithm_describe_base)
AlgorithmDescribeBaseMeta (class in PartSegCore.algorithm_describe_base)
AlgorithmDescribeNotFound
AlgorithmProperty (class in PartSegCore.algorithm_describe_base)
always_report (in module PartSeg.state_store)
analysis_algorithm (PartSegCore.register.RegisterEnum attribute)
analysis_load (PartSegCore.register.RegisterEnum attribute)
analysis_measurement (PartSegCore.register.RegisterEnum attribute)
analysis_save (PartSegCore.register.RegisterEnum attribute)
Appearance (class in PartSeg.common_gui.advanced_tabs)
apply_filter() (in module PartSegCore.image_operations)
area (PartSegCore.analysis.measurement_base.Leaf attribute)
area_type() (PartSegCore.analysis.measurement_base.MeasurementMethodBase static method)
(PartSegCore.analysis.measurement_calculation.DistanceMaskROI static method)
(PartSegCore.analysis.measurement_calculation.RimPixelBrightnessSum static method)
(PartSegCore.analysis.measurement_calculation.RimVolume static method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartPixelBrightnessSum static method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartVolume static method)
AreaType (class in PartSegCore.analysis.measurement_base)
arguments (PartSegCore.analysis.measurement_calculation.SettingsValue attribute)
as_rgb_tuple() (PartSeg.common_backend.base_settings.Color method)
auto_report (in module PartSeg.state_store)
available_colormaps (PartSeg.common_backend.base_settings.ViewSettings property)
B
base (PartSegCore.analysis.calculation_plan.MaskSub attribute)
base_class_dict (in module PartSegCore.register)
base_model_to_algorithm_property() (in module PartSegCore.algorithm_describe_base)
base_prefix (PartSegCore.analysis.calculation_plan.FileCalculation property)
BaseAlgorithmSettingsWidget (class in PartSeg.common_gui.algorithms_description)
BaseCalculation (class in PartSegCore.analysis.calculation_plan)
BaseImageReader (class in PartSegImage.image_reader)
BaseImageReaderBuffer (class in PartSegImage.image_reader)
BaseImageWriter (class in PartSegImage)
BaseMainMenu (class in PartSeg.common_gui.main_window)
BaseMainWindow (class in PartSeg.common_gui.main_window)
BaseMultiScaleOpening (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
BaseSettings (class in PartSeg.common_backend.base_settings)
BaseThreshold (class in PartSegCore.segmentation)
(class in PartSegCore.segmentation.threshold)
BaseThresholdFlowAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
BaseWatershed (class in PartSegCore.segmentation)
(class in PartSegCore.segmentation.watershed)
BatchManager (class in PartSegCore.analysis.batch_processing.parallel_backend)
BatchResultDescription (class in PartSegCore.analysis.batch_processing.batch_backend)
BatchWorker (class in PartSegCore.analysis.batch_processing.parallel_backend)
bilateral() (in module PartSegCore.image_operations)
blocked() (PartSeg.common_gui.colormap_creator.ColormapList method)
(PartSeg.common_gui.colormap_creator.PColormapList method)
BlurInfoWidget (class in PartSeg.common_gui.channel_control)
border_mask() (PartSegCore.mask_partition_utils.BorderRim static method)
BorderRim (class in PartSegCore.mask_partition_utils)
(class in PartSegCore.segmentation.restartable_segmentation_algorithms)
BoundInfo (class in PartSegCore.roi_info)
box_size() (PartSegCore.roi_info.BoundInfo method)
C
calc_bounds() (PartSegCore.roi_info.ROIInfo static method)
calc_index_to_frame() (PartSegImage.Image static method)
calculate_borders() (in module PartSegCore.color_image)
calculate_distances_array() (in module PartSegCore.segmentation.watershed)
calculate_mask() (in module PartSegCore.mask_create)
calculate_mask_from_project() (in module PartSegCore.project_info)
calculate_property() (PartSegCore.analysis.measurement_base.MeasurementMethodBase static method)
(PartSegCore.analysis.measurement_calculation.ColocalizationMeasurement class method)
(PartSegCore.analysis.measurement_calculation.Compactness static method)
(PartSegCore.analysis.measurement_calculation.ComponentBoundingBox static method)
(PartSegCore.analysis.measurement_calculation.ComponentsNumber static method)
(PartSegCore.analysis.measurement_calculation.Diameter static method)
(PartSegCore.analysis.measurement_calculation.DiameterOld static method)
(PartSegCore.analysis.measurement_calculation.DistanceMaskROI class method)
(PartSegCore.analysis.measurement_calculation.DistanceROIROI class method)
(PartSegCore.analysis.measurement_calculation.FirstPrincipalAxisLength static method)
(PartSegCore.analysis.measurement_calculation.GetROIAnnotationType static method)
(PartSegCore.analysis.measurement_calculation.Haralick class method)
(PartSegCore.analysis.measurement_calculation.MaximumPixelBrightness static method)
(PartSegCore.analysis.measurement_calculation.MeanPixelBrightness static method)
(PartSegCore.analysis.measurement_calculation.MedianPixelBrightness static method)
(PartSegCore.analysis.measurement_calculation.MinimumPixelBrightness static method)
(PartSegCore.analysis.measurement_calculation.Moment static method)
(PartSegCore.analysis.measurement_calculation.PixelBrightnessSum static method)
(PartSegCore.analysis.measurement_calculation.RimPixelBrightnessSum static method)
(PartSegCore.analysis.measurement_calculation.RimVolume static method)
(PartSegCore.analysis.measurement_calculation.ROINeighbourhoodROI class method)
(PartSegCore.analysis.measurement_calculation.SecondPrincipalAxisLength static method)
(PartSegCore.analysis.measurement_calculation.Sphericity static method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartPixelBrightnessSum static method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartVolume static method)
(PartSegCore.analysis.measurement_calculation.StandardDeviationOfPixelBrightness static method)
(PartSegCore.analysis.measurement_calculation.Surface static method)
(PartSegCore.analysis.measurement_calculation.ThirdPrincipalAxisLength static method)
(PartSegCore.analysis.measurement_calculation.Volume class method)
(PartSegCore.analysis.measurement_calculation.Voxels class method)
(PartSegCore.analysis.measurement_calculation.VoxelSize class method)
calculate_task() (PartSegCore.analysis.batch_processing.parallel_backend.BatchWorker method)
Calculation (class in PartSegCore.analysis.calculation_plan)
calculation_finished() (PartSegCore.analysis.batch_processing.batch_backend.DataWriter method)
calculation_plan (PartSegCore.analysis.calculation_plan.FileCalculation property)
calculation_run() (PartSegCore.segmentation.restartable_segmentation_algorithms.BaseMultiScaleOpening method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.BaseThresholdFlowAlgorithm method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.BorderRim method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.MaskDistanceSplit method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.OtsuSegment method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.RestartableAlgorithm method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.ThresholdBaseAlgorithm method)
(PartSegCore.segmentation.RestartableAlgorithm method)
calculation_tree (PartSegCore.analysis.measurement_base.MeasurementEntry attribute)
CalculationManager (class in PartSegCore.analysis.batch_processing.batch_backend)
CalculationPlan (class in PartSegCore.analysis.calculation_plan)
CalculationProcess (class in PartSegCore.analysis.batch_processing.batch_backend)
CalculationTree (class in PartSegCore.analysis.calculation_plan)
change_channel (PartSeg.common_gui.channel_control.ColorComboBoxGroup attribute)
change_channels_num() (PartSeg.common_gui.universal_gui_part.ChannelComboBox method)
(PartSeg.common_gui.universal_gui_part.MguiChannelComboBox method)
change_colors() (PartSeg.common_gui.channel_control.ColorComboBox method)
change_current() (PartSeg.common_gui.channel_control.ChannelProperty method)
change_profile() (PartSeg.common_backend.base_settings.ViewSettings method)
change_text() (PartSeg.common_gui.universal_gui_part.InfoLabel method)
Channel (class in PartSegImage)
channel (PartSegCore.analysis.calculation_plan.MeasurementCalculate attribute)
(PartSegCore.analysis.measurement_base.Leaf attribute)
channel_colormap_changed (PartSeg.common_gui.channel_control.ColorComboBox attribute)
channel_pos (PartSegImage.Image property)
channel_visible_changed (PartSeg.common_gui.channel_control.ColorComboBox attribute)
ChannelComboBox (class in PartSeg.common_gui.universal_gui_part)
ChannelPreview (class in PartSeg.common_gui.colormap_creator)
ChannelProperty (class in PartSeg.common_gui.channel_control)
channels (PartSeg.common_backend.base_settings.ImageSettings property)
(PartSegImage.Image property)
check_for_updates (in module PartSeg.state_store)
check_name() (PartSegCore.algorithm_describe_base.AlgorithmSelection class method)
(PartSegCore.segmentation.watershed.WatershedSelection class method)
check_state() (PartSeg.common_gui.colormap_creator.ColormapList method)
chosen_colormap (PartSeg.common_backend.base_settings.ViewSettings property)
chosen_colormap_change() (PartSeg.common_backend.base_settings.ViewSettings method)
class_path (PartSegCore.algorithm_describe_base.AlgorithmSelection attribute)
(PartSegCore.analysis.algorithm_description.AnalysisAlgorithmSelection attribute)
(PartSegCore.segmentation.threshold.DoubleThresholdSelection attribute)
(PartSegCore.segmentation.threshold.RangeThresholdSelection attribute)
(PartSegCore.segmentation.threshold.ThresholdSelection attribute)
(PartSegCore.segmentation.watershed.WatershedSelection attribute)
clean() (PartSeg.common_backend.segmentation_thread.SegmentationThread method)
clear() (PartSeg.common_gui.colormap_creator.ColormapEdit method)
clicked (PartSeg.common_gui.channel_control.ColorComboBox attribute)
clip_array() (PartSegImage.Image method)
clip_to_mask (PartSegCore.mask_create.MaskProperty attribute)
closeEvent() (PartSeg.common_gui.advanced_tabs.AdvancedWindow method)
(PartSeg.common_gui.main_window.BaseMainWindow method)
cmp_history_element() (PartSeg.common_backend.base_settings.BaseSettings static method)
CollapseCheckbox (class in PartSeg.common_gui.collapse_checkbox)
ColocalizationMeasurement (class in PartSegCore.analysis.measurement_calculation)
Color (class in PartSeg.common_backend.base_settings)
color_from_qcolor() (in module PartSeg.common_gui.colormap_creator)
color_grayscale() (in module PartSegCore.color_image)
ColorComboBox (class in PartSeg.common_gui.channel_control)
ColorComboBoxGroup (class in PartSeg.common_gui.channel_control)
ColorControl (class in PartSeg.common_gui.advanced_tabs)
coloring_update (PartSeg.common_gui.channel_control.ColorComboBoxGroup attribute)
colormap_added (PartSeg.common_backend.base_settings.ColormapDict property)
colormap_changed (PartSeg.common_gui.channel_control.ColorComboBox property)
colormap_changes (PartSeg.common_backend.base_settings.ViewSettings attribute)
colormap_removed (PartSeg.common_backend.base_settings.ColormapDict property)
colormap_selected (PartSeg.common_gui.colormap_creator.ColormapCreator attribute)
ColormapCreator (class in PartSeg.common_gui.colormap_creator)
ColormapDict (class in PartSeg.common_backend.base_settings)
ColormapEdit (class in PartSeg.common_gui.colormap_creator)
ColormapList (class in PartSeg.common_gui.colormap_creator)
ColormapLoad (class in PartSeg.common_gui.colormap_creator)
ColormapSave (class in PartSeg.common_gui.colormap_creator)
ColorStyledDelegate (class in PartSeg.common_gui.channel_control)
Compactness (class in PartSegCore.analysis.measurement_calculation)
component_str (PartSegCore.analysis.batch_processing.batch_backend.FileData attribute)
ComponentBoundingBox (class in PartSegCore.analysis.measurement_calculation)
components_mask() (PartSeg.common_backend.base_settings.ImageSettings method)
components_translation (PartSegCore.analysis.measurement_calculation.ComponentsInfo attribute)
ComponentsInfo (class in PartSegCore.analysis.measurement_calculation)
ComponentsNumber (class in PartSegCore.analysis.measurement_calculation)
connect_() (PartSeg.common_backend.base_settings.BaseSettings method)
connect_channel_colormap_name() (PartSeg.common_backend.base_settings.ViewSettings method)
connect_to_profile() (PartSeg.common_backend.base_settings.ViewSettings method)
const_item_dict (PartSeg.common_backend.base_settings.ColormapDict attribute)
(PartSeg.common_backend.base_settings.LabelColorDict attribute)
(PartSeg.common_backend.partially_const_dict.PartiallyConstDict attribute)
construct() (PartSegCore.segmentation.watershed.WatershedSelection class method)
convert_colormap_to_image() (in module PartSeg.common_gui.numpy_qimage)
copy() (PartSegCore.segmentation.watershed.WatershedSelection method)
CorrelationEnum (class in PartSegCore.analysis.measurement_calculation)
create_colormap_image() (in module PartSeg.common_gui.numpy_qimage)
create_issue() (PartSeg.common_gui.error_report.ErrorDialog method)
critical() (PartSeg.common_gui.error_report.QMessageFromException class method)
current_choose (PartSeg.common_gui.universal_gui_part.EnumComboBox property)
current_colormap() (PartSeg.common_gui.colormap_creator.ColormapCreator method)
current_colormaps (PartSeg.common_gui.channel_control.ColorComboBoxGroup property)
current_colors (PartSeg.common_gui.channel_control.ColorComboBoxGroup property)
current_labels (PartSeg.common_backend.base_settings.ViewSettings property)
custom_plugin_load (in module PartSeg.state_store)
CustomDoubleSpinBox (class in PartSeg.common_gui.universal_gui_part)
CustomParser (class in PartSeg.common_backend.base_argparser)
CustomSpinBox (class in PartSeg.common_gui.universal_gui_part)
cut_image() (PartSegImage.Image method)
CziImageReader (class in PartSegImage)
(class in PartSegImage.image_reader)
D
DataImportErrorDialog (class in PartSeg.common_gui.error_report)
DataWriter (class in PartSegCore.analysis.batch_processing.batch_backend)
decode_int() (PartSegImage.image_reader.TiffImageReader static method)
(PartSegImage.TiffImageReader static method)
default_area (PartSegCore.analysis.measurement_calculation.SettingsValue attribute)
default_colormap_dict (in module PartSegCore.color_image)
deleteLater() (PartSeg.common_gui.main_window.BaseMainWindow method)
develop (in module PartSeg.state_store)
DevelopTab (class in PartSeg.common_gui.advanced_tabs)
Diameter (class in PartSegCore.analysis.measurement_calculation)
DiameterOld (class in PartSegCore.analysis.measurement_calculation)
dict() (PartSegCore.segmentation.watershed.WatershedSelection method)
dilate (PartSegCore.mask_create.MaskProperty attribute)
dilate() (in module PartSegCore.image_operations)
dilate_radius (PartSegCore.mask_create.MaskProperty attribute)
directory (PartSegCore.analysis.calculation_plan.Save attribute)
DistanceMaskROI (class in PartSegCore.analysis.measurement_calculation)
DistancePoint (class in PartSegCore.analysis.measurement_calculation)
DistanceROIROI (class in PartSegCore.analysis.measurement_calculation)
DistanceWatershed (class in PartSegCore.segmentation.watershed)
distribute_evenly() (PartSeg.common_gui.colormap_creator.ColormapEdit method)
do_calculation() (in module PartSegCore.analysis.batch_processing.batch_backend)
(PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
double_normal() (in module PartSegCore.analysis.measurement_calculation)
DoubleOtsu (class in PartSegCore.segmentation.threshold)
DoubleThreshold (class in PartSegCore.segmentation.threshold)
dragEnterEvent() (PartSeg.common_gui.main_window.BaseMainWindow method)
dropEvent() (PartSeg.common_gui.main_window.BaseMainWindow method)
dtype (PartSegImage.Image property)
dump() (PartSeg.common_backend.base_settings.BaseSettings method)
dump_data() (PartSegCore.analysis.batch_processing.batch_backend.FileData method)
dump_part() (PartSeg.common_backend.base_settings.BaseSettings method)
E
edit_request (PartSeg.common_gui.colormap_creator.ChannelPreview attribute)
edit_signal (PartSeg.common_gui.colormap_creator.ColormapList attribute)
empty_fun() (in module PartSegCore.analysis.measurement_calculation)
(in module PartSegCore.mask.io_functions)
enterEvent() (PartSeg.common_gui.channel_control.ColorComboBox method)
(PartSeg.common_gui.universal_gui_part.InfoLabel method)
EnumComboBox (class in PartSeg.common_gui.universal_gui_part)
erode() (in module PartSegCore.image_operations)
error_signal (PartSeg.common_backend.progress_thread.ProgressTread attribute)
ErrorDialog (class in PartSeg.common_gui.error_report)
errors (PartSegCore.analysis.batch_processing.batch_backend.BatchResultDescription attribute)
exception_occurred (PartSeg.common_backend.segmentation_thread.SegmentationThread attribute)
ExceptionList (class in PartSeg.common_gui.error_report)
ExceptionListItem (class in PartSeg.common_gui.error_report)
exec() (PartSeg.common_gui.error_report.ErrorDialog method)
exec_() (PartSeg.common_gui.error_report.ErrorDialog method)
ExecuteFunctionThread (class in PartSeg.common_backend.progress_thread)
execution_done (PartSeg.common_backend.segmentation_thread.SegmentationThread attribute)
F
FDTWatershed (class in PartSegCore.segmentation.watershed)
FieldsList (class in PartSeg.common_gui.algorithms_description)
file_mask (PartSegCore.analysis.calculation_plan.NodeType attribute)
file_name (PartSeg.common_backend.base_settings.SaveSettingsDescription attribute)
file_path (PartSegCore.io_utils.PointsInfo attribute)
FileCalculation (class in PartSegCore.analysis.calculation_plan)
FileData (class in PartSegCore.analysis.batch_processing.batch_backend)
FileType (class in PartSegCore.analysis.batch_processing.batch_backend)
fill_2d_holes_in_mask() (in module PartSegCore.mask_create)
fill_holes (PartSegCore.mask_create.MaskProperty attribute)
fill_holes_in_mask() (in module PartSegCore.mask_create)
find_problematic_entries() (in module PartSegCore.io_utils)
find_problematic_leafs() (in module PartSegCore.io_utils)
finish() (PartSegCore.analysis.batch_processing.batch_backend.DataWriter method)
finished (PartSegCore.analysis.batch_processing.parallel_backend.BatchManager property)
finished() (PartSegCore.analysis.batch_processing.batch_backend.FileData method)
finished_task() (PartSeg.common_backend.segmentation_thread.SegmentationThread method)
FirstPrincipalAxisLength (class in PartSegCore.analysis.measurement_calculation)
fit_array_to_image() (PartSegImage.Image method)
fit_mask_to_image() (PartSegImage.Image method)
flow (PartSegCore.register.RegisterEnum attribute)
FlowMethodSelection (in module PartSegCore.segmentation.watershed)
FormWidget (class in PartSeg.common_gui.algorithms_description)
from_algorithm_property() (PartSeg.common_gui.algorithms_description.QtAlgorithmProperty class method)
from_orm() (PartSegCore.segmentation.watershed.WatershedSelection class method)
full_segmentation (PartSeg.common_backend.base_settings.ImageSettings property)
function (PartSegCore.analysis.measurement_calculation.SettingsValue attribute)
G
GammaInfoWidget (class in PartSeg.common_gui.channel_control)
gaussian() (in module PartSegCore.image_operations)
GenericImageReader (class in PartSegImage)
(class in PartSegImage.image_reader)
get() (PartSeg.common_backend.base_settings.BaseSettings method)
get_additional_layers() (PartSegCore.segmentation.restartable_segmentation_algorithms.ThresholdBaseAlgorithm method)
get_algorithm() (PartSeg.common_backend.base_settings.BaseSettings method)
get_array() (PartSeg.common_backend.base_settings.LabelColorDict method)
get_array_axis_positions() (PartSegImage.Image class method)
get_axis_positions() (PartSegImage.Image class method)
get_base_calculation() (PartSegCore.analysis.calculation_plan.Calculation method)
get_channel() (PartSegImage.Image method)
get_channel_colormap_name() (PartSeg.common_backend.base_settings.ViewSettings method)
get_channel_info() (PartSeg.common_backend.base_settings.ViewSettings method)
get_channel_num() (PartSegCore.analysis.measurement_base.Leaf method)
(PartSegCore.analysis.measurement_base.MeasurementEntry method)
(PartSegCore.analysis.measurement_base.Node method)
get_colormap_widget() (PartSeg.common_gui.colormap_creator.ColormapList method)
get_component_info() (PartSegCore.analysis.measurement_calculation.MeasurementResult method)
get_data_by_axis() (PartSegImage.Image method)
get_data_loader() (in module PartSegCore.analysis.batch_processing.batch_backend)
get_data_to_write() (PartSegCore.analysis.batch_processing.batch_backend.SheetData method)
get_default() (PartSegCore.algorithm_describe_base.AlgorithmSelection class method)
(PartSegCore.algorithm_describe_base.Register method)
(PartSegCore.segmentation.watershed.WatershedSelection class method)
get_description() (PartSegCore.analysis.measurement_base.MeasurementMethodBase class method)
get_dimension_letters() (PartSegImage.Image method)
get_dimension_number() (PartSegImage.Image method)
get_el_name() (PartSegCore.analysis.calculation_plan.CalculationPlan static method)
get_errors() (PartSegCore.analysis.batch_processing.batch_backend.FileData method)
get_field() (PartSeg.common_gui.algorithms_description.QtAlgorithmProperty method)
get_fields() (PartSegCore.algorithm_describe_base.AlgorithmDescribeBase class method)
(PartSegCore.io_utils.LoadBase class method)
(PartSegCore.io_utils.LoadPoints class method)
(PartSegCore.io_utils.SaveMaskAsTiff class method)
(PartSegCore.io_utils.SaveROIAsNumpy class method)
(PartSegCore.io_utils.SaveROIAsTIFF class method)
(PartSegCore.io_utils.SaveScreenshot class method)
(PartSegCore.mask.io_functions.SaveParametersJSON class method)
(PartSegCore.segmentation.BaseThreshold class method)
(PartSegCore.segmentation.BaseWatershed class method)
(PartSegCore.segmentation.NoiseFilteringBase class method)
(PartSegCore.segmentation.RestartableAlgorithm class method)
(PartSegCore.segmentation.ROIExtractionAlgorithm class method)
(PartSegCore.segmentation.StackAlgorithm class method)
(PartSegCore.segmentation.watershed.BaseWatershed class method)
(PartSegCore.segmentation.watershed.DistanceWatershed class method)
(PartSegCore.segmentation.watershed.FDTWatershed class method)
(PartSegCore.segmentation.watershed.MSOWatershed class method)
(PartSegCore.segmentation.watershed.PathDistanceWatershed class method)
(PartSegCore.segmentation.watershed.PathWatershed class method)
get_from_profile() (PartSeg.common_backend.base_settings.ViewSettings method)
get_getter_and_setter_function() (PartSeg.common_gui.algorithms_description.QtAlgorithmProperty static method)
get_global_names() (PartSegCore.analysis.measurement_calculation.MeasurementResult method)
get_global_parameters() (PartSegCore.analysis.measurement_calculation.MeasurementResult method)
get_history() (PartSeg.common_backend.base_settings.BaseSettings method)
get_image_for_save() (PartSegImage.Image method)
get_info_text() (PartSeg.common_backend.segmentation_thread.SegmentationThread method)
get_labels() (PartSegCore.analysis.measurement_calculation.MeasurementResult method)
get_last_files() (PartSeg.common_backend.base_settings.BaseSettings method)
get_last_files_multiple() (PartSeg.common_backend.base_settings.BaseSettings method)
get_layer() (PartSegImage.Image method)
get_list_file_mask() (PartSegCore.analysis.calculation_plan.CalculationPlan method)
get_mask_for_save() (PartSegImage.Image method)
get_mask_names() (PartSegCore.analysis.calculation_plan.CalculationPlan method)
get_mask_path() (PartSegCore.analysis.calculation_plan.MaskFile method)
(PartSegCore.analysis.calculation_plan.MaskMapper method)
(PartSegCore.analysis.calculation_plan.MaskSub method)
(PartSegCore.analysis.calculation_plan.MaskSuffix method)
get_measurements() (PartSegCore.analysis.calculation_plan.CalculationPlan method)
get_name() (PartSeg.common_gui.colormap_creator.ColormapLoad class method)
(PartSeg.common_gui.colormap_creator.ColormapSave class method)
(PartSegCore.algorithm_describe_base.AlgorithmDescribeBase class method)
(PartSegCore.analysis.measurement_base.MeasurementMethodBase class method)
(PartSegCore.io_utils.LoadPlanExcel class method)
(PartSegCore.io_utils.LoadPlanJson class method)
(PartSegCore.io_utils.LoadPoints class method)
(PartSegCore.io_utils.SaveMaskAsTiff class method)
(PartSegCore.io_utils.SaveROIAsNumpy class method)
(PartSegCore.io_utils.SaveROIAsTIFF class method)
(PartSegCore.io_utils.SaveScreenshot class method)
(PartSegCore.mask.io_functions.LoadROI class method)
(PartSegCore.mask.io_functions.LoadROIFromTIFF class method)
(PartSegCore.mask.io_functions.LoadROIImage class method)
(PartSegCore.mask.io_functions.LoadROIParameters class method)
(PartSegCore.mask.io_functions.LoadStackImage class method)
(PartSegCore.mask.io_functions.LoadStackImageWithMask class method)
(PartSegCore.mask.io_functions.SaveComponents class method)
(PartSegCore.mask.io_functions.SaveComponentsImagej class method)
(PartSegCore.mask.io_functions.SaveParametersJSON class method)
(PartSegCore.mask.io_functions.SaveROI class method)
(PartSegCore.mask_partition_utils.BorderRim class method)
(PartSegCore.mask_partition_utils.MaskDistanceSplit class method)
(PartSegCore.segmentation.BaseThreshold class method)
(PartSegCore.segmentation.BaseWatershed class method)
(PartSegCore.segmentation.NoiseFilteringBase class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.BorderRim class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.LowerThresholdAlgorithm class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.LowerThresholdFlowAlgorithm class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.LowerThresholdMultiScaleOpening class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.MaskDistanceSplit class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.OtsuSegment class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.RangeThresholdAlgorithm class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.UpperThresholdAlgorithm class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.UpperThresholdFlowAlgorithm class method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.UpperThresholdMultiScaleOpening class method)
(PartSegCore.segmentation.RestartableAlgorithm class method)
(PartSegCore.segmentation.ROIExtractionAlgorithm class method)
(PartSegCore.segmentation.StackAlgorithm class method)
(PartSegCore.segmentation.threshold.DoubleOtsu class method)
(PartSegCore.segmentation.threshold.DoubleThreshold class method)
(PartSegCore.segmentation.threshold.HuangThreshold class method)
(PartSegCore.segmentation.threshold.IntermodesThreshold class method)
(PartSegCore.segmentation.threshold.IsoDataThreshold class method)
(PartSegCore.segmentation.threshold.KittlerIllingworthThreshold class method)
(PartSegCore.segmentation.threshold.LiThreshold class method)
(PartSegCore.segmentation.threshold.ManualThreshold class method)
(PartSegCore.segmentation.threshold.MaximumDistanceCore class method)
(PartSegCore.segmentation.threshold.MaximumEntropyThreshold class method)
(PartSegCore.segmentation.threshold.MomentsThreshold class method)
(PartSegCore.segmentation.threshold.MultipleOtsu class method)
(PartSegCore.segmentation.threshold.MultipleOtsuThreshold class method)
(PartSegCore.segmentation.threshold.OtsuThreshold class method)
(PartSegCore.segmentation.threshold.RangeThreshold class method)
(PartSegCore.segmentation.threshold.RenyiEntropyThreshold class method)
(PartSegCore.segmentation.threshold.ShanbhagThreshold class method)
(PartSegCore.segmentation.threshold.TriangleThreshold class method)
(PartSegCore.segmentation.threshold.YenThreshold class method)
(PartSegCore.segmentation.watershed.BaseWatershed class method)
(PartSegCore.segmentation.watershed.DistanceWatershed class method)
(PartSegCore.segmentation.watershed.FDTWatershed class method)
(PartSegCore.segmentation.watershed.MSOWatershed class method)
(PartSegCore.segmentation.watershed.PathDistanceWatershed class method)
(PartSegCore.segmentation.watershed.PathWatershed class method)
get_node() (PartSegCore.analysis.calculation_plan.CalculationPlan method)
get_parameters() (PartSegCore.analysis.calculation_plan.MaskFile method)
(PartSegCore.analysis.calculation_plan.MaskMapper method)
(PartSegCore.analysis.calculation_plan.MaskSub method)
(PartSegCore.analysis.calculation_plan.MaskSuffix method)
get_path_history() (PartSeg.common_backend.base_settings.BaseSettings method)
get_position() (PartSeg.common_backend.partially_const_dict.PartiallyConstDict method)
get_project_info() (PartSeg.common_backend.base_settings.BaseSettings method)
get_ranges() (PartSegImage.Image method)
get_raw_copy() (PartSegCore.mask.io_functions.MaskProjectTuple method)
(PartSegCore.project_info.ProjectInfoBase method)
get_result() (PartSegCore.analysis.batch_processing.parallel_backend.BatchManager method)
get_results() (PartSegCore.analysis.batch_processing.batch_backend.CalculationManager method)
get_save_list() (PartSeg.common_backend.base_settings.BaseSettings method)
get_save_path() (in module PartSegCore.analysis.calculation_plan)
get_selected() (PartSeg.common_gui.colormap_creator.ColormapList method)
(PartSeg.common_gui.colormap_creator.PColormapList method)
get_separated() (PartSegCore.analysis.measurement_calculation.MeasurementResult method)
get_setting_class() (PartSeg.common_gui.main_window.BaseMainWindow class method)
get_starting_leaf() (PartSegCore.analysis.measurement_base.MeasurementMethodBase class method)
(PartSegCore.analysis.measurement_calculation.ComponentBoundingBox class method)
(PartSegCore.analysis.measurement_calculation.DistanceMaskROI class method)
(PartSegCore.analysis.measurement_calculation.DistanceROIROI class method)
(PartSegCore.analysis.measurement_calculation.GetROIAnnotationType class method)
(PartSegCore.analysis.measurement_calculation.RimPixelBrightnessSum class method)
(PartSegCore.analysis.measurement_calculation.RimVolume class method)
(PartSegCore.analysis.measurement_calculation.ROINeighbourhoodROI class method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartPixelBrightnessSum class method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartVolume class method)
get_steps_num() (PartSegCore.segmentation.RestartableAlgorithm static method)
(PartSegCore.segmentation.ROIExtractionAlgorithm static method)
(PartSegCore.segmentation.StackAlgorithm static method)
get_style_sheet() (PartSeg.common_backend.base_settings.ViewSettings method)
get_um_shift() (PartSegImage.Image method)
get_um_spacing() (PartSegImage.Image method)
get_unit() (PartSegCore.analysis.measurement_base.Leaf method)
(PartSegCore.analysis.measurement_base.MeasurementEntry method)
(PartSegCore.analysis.measurement_base.Node method)
get_units() (PartSegCore.analysis.measurement_base.MeasurementMethodBase class method)
(PartSegCore.analysis.measurement_calculation.ColocalizationMeasurement class method)
(PartSegCore.analysis.measurement_calculation.Compactness class method)
(PartSegCore.analysis.measurement_calculation.ComponentBoundingBox class method)
(PartSegCore.analysis.measurement_calculation.ComponentsNumber class method)
(PartSegCore.analysis.measurement_calculation.Diameter class method)
(PartSegCore.analysis.measurement_calculation.DiameterOld class method)
(PartSegCore.analysis.measurement_calculation.DistanceMaskROI class method)
(PartSegCore.analysis.measurement_calculation.FirstPrincipalAxisLength class method)
(PartSegCore.analysis.measurement_calculation.GetROIAnnotationType class method)
(PartSegCore.analysis.measurement_calculation.Haralick class method)
(PartSegCore.analysis.measurement_calculation.MaximumPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.MeanPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.MedianPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.MinimumPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.Moment class method)
(PartSegCore.analysis.measurement_calculation.PixelBrightnessSum class method)
(PartSegCore.analysis.measurement_calculation.RimPixelBrightnessSum class method)
(PartSegCore.analysis.measurement_calculation.RimVolume class method)
(PartSegCore.analysis.measurement_calculation.SecondPrincipalAxisLength class method)
(PartSegCore.analysis.measurement_calculation.Sphericity class method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartPixelBrightnessSum class method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartVolume class method)
(PartSegCore.analysis.measurement_calculation.StandardDeviationOfPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.Surface class method)
(PartSegCore.analysis.measurement_calculation.ThirdPrincipalAxisLength class method)
(PartSegCore.analysis.measurement_calculation.Volume class method)
(PartSegCore.analysis.measurement_calculation.Voxels class method)
(PartSegCore.analysis.measurement_calculation.VoxelSize class method)
get_user() (in module PartSeg.common_gui.error_report)
get_value() (PartSeg.common_gui.universal_gui_part.ChannelComboBox method)
(PartSeg.common_gui.universal_gui_part.EnumComboBox method)
GetROIAnnotationType (class in PartSegCore.analysis.measurement_calculation)
global_counter (PartSegCore.analysis.batch_processing.batch_backend.BatchResultDescription attribute)
good_sheet_name() (PartSegCore.analysis.batch_processing.batch_backend.FileData method)
H
Haralick (class in PartSegCore.analysis.measurement_calculation)
HaralickEnum (class in PartSegCore.analysis.measurement_calculation)
has_channels (PartSeg.common_backend.base_settings.ImageSettings property)
has_mask (PartSegImage.Image property)
has_mask_components() (in module PartSegCore.analysis.measurement_base)
has_roi_components() (in module PartSegCore.analysis.measurement_base)
has_work (PartSegCore.analysis.batch_processing.batch_backend.CalculationManager property)
(PartSegCore.analysis.batch_processing.parallel_backend.BatchManager property)
hash_fun_call_name() (in module PartSegCore.analysis.measurement_calculation)
height() (PartSeg.common_gui.universal_gui_part.TextShow method)
help_message (PartSegCore.analysis.measurement_calculation.SettingsValue attribute)
hideEvent() (PartSeg.common_gui.algorithms_description.BaseAlgorithmSettingsWidget method)
(PartSeg.common_gui.colormap_creator.PColormapCreator method)
(PartSeg.common_gui.universal_gui_part.InfoLabel method)
history_current_element() (PartSeg.common_backend.base_settings.BaseSettings method)
history_next_element() (PartSeg.common_backend.base_settings.BaseSettings method)
history_pop() (PartSeg.common_backend.base_settings.BaseSettings method)
history_redo_clean() (PartSeg.common_backend.base_settings.BaseSettings method)
history_redo_size() (PartSeg.common_backend.base_settings.BaseSettings method)
history_size() (PartSeg.common_backend.base_settings.BaseSettings method)
HistoryProblem
Hline (class in PartSeg.common_gui.universal_gui_part)
HuangThreshold (class in PartSegCore.segmentation.threshold)
I
Image (class in PartSegImage)
image (PartSeg.common_backend.base_settings.ImageSettings property)
Image (PartSegCore.analysis.calculation_plan.RootType attribute)
image_changed (PartSeg.common_backend.base_settings.ImageSettings attribute)
image_channel_count_changed (PartSeg.common_backend.base_settings.ImageSettings attribute)
image_class (PartSegImage.CziImageReader attribute)
(PartSegImage.GenericImageReader attribute)
(PartSegImage.image_reader.BaseImageReader attribute)
(PartSegImage.ObsepImageReader attribute)
(PartSegImage.OifImagReader attribute)
(PartSegImage.TiffImageReader attribute)
image_path (PartSeg.common_backend.base_settings.ImageSettings property)
image_path_changed (PartSeg.common_backend.base_settings.ImageSettings attribute)
image_shape (PartSeg.common_backend.base_settings.ImageSettings property)
image_spacing (PartSeg.common_backend.base_settings.ImageSettings property)
image_spacing_changed (PartSeg.common_backend.base_settings.ImageSettings attribute)
image_transform (PartSegCore.register.RegisterEnum attribute)
IMAGEJImageWriter (class in PartSegImage)
ImageSettings (class in PartSeg.common_backend.base_settings)
ImageWriter (class in PartSegImage)
import_config() (in module PartSeg.common_backend.load_backup)
info_function() (PartSeg.common_backend.progress_thread.ProgressTread method)
InfoLabel (class in PartSeg.common_gui.universal_gui_part)
information() (PartSeg.common_gui.error_report.QMessageFromException class method)
InteractiveAlgorithmSettingsWidget (class in PartSeg.common_gui.algorithms_description)
IntermodesThreshold (class in PartSegCore.segmentation.threshold)
is_2d (PartSegImage.Image property)
is_blur (PartSeg.common_gui.channel_control.ColorComboBox property)
is_checked (PartSeg.common_gui.colormap_creator.ChannelPreview property)
is_checked() (PartSeg.common_gui.channel_control.ColorComboBox method)
is_component (PartSegCore.analysis.measurement_calculation.SettingsValue attribute)
is_component() (PartSegCore.analysis.measurement_base.MeasurementMethodBase class method)
is_empty_sheet() (PartSegCore.analysis.batch_processing.batch_backend.DataWriter method)
is_image_2d() (PartSeg.common_backend.base_settings.ImageSettings method)
is_lock (PartSeg.common_gui.channel_control.ColorComboBox property)
is_per_component() (PartSegCore.analysis.measurement_base.Leaf method)
(PartSegCore.analysis.measurement_base.Node method)
is_ready() (PartSegCore.analysis.calculation_plan.MaskFile method)
(PartSegCore.analysis.calculation_plan.MaskMapper static method)
is_stack (PartSegImage.Image property)
is_time (PartSegImage.Image property)
is_valid_sheet_name() (PartSegCore.analysis.batch_processing.batch_backend.CalculationManager method)
IsoDataThreshold (class in PartSegCore.segmentation.threshold)
item_added (PartSeg.common_backend.partially_const_dict.PartiallyConstDict attribute)
item_double_clicked() (PartSeg.common_gui.error_report.ExceptionList static method)
item_removed (PartSeg.common_backend.partially_const_dict.PartiallyConstDict attribute)
iterate_over() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
iterative_double_normal() (in module PartSegCore.analysis.measurement_calculation)
J
jobs_status (PartSegCore.analysis.batch_processing.batch_backend.BatchResultDescription attribute)
json() (PartSegCore.segmentation.watershed.WatershedSelection method)
json_encoder_class (PartSeg.common_backend.base_settings.BaseSettings attribute)
K
KittlerIllingworthThreshold (class in PartSegCore.segmentation.threshold)
L
label_colors (PartSeg.common_backend.base_settings.ViewSettings property)
LabelColorDict (class in PartSeg.common_backend.base_settings)
labels_changed (PartSeg.common_backend.base_settings.ViewSettings attribute)
layers (PartSegImage.Image property)
leaveEvent() (PartSeg.common_gui.channel_control.ColorComboBox method)
(PartSeg.common_gui.universal_gui_part.InfoLabel method)
left (PartSegCore.analysis.measurement_base.Node attribute)
ListInput (class in PartSeg.common_gui.algorithms_description)
LiThreshold (class in PartSegCore.segmentation.threshold)
load() (PartSeg.common_backend.base_settings.BaseSettings method)
(PartSeg.common_gui.colormap_creator.ColormapLoad class method)
(PartSegCore.io_utils.LoadBase class method)
(PartSegCore.io_utils.LoadPlanExcel class method)
(PartSegCore.io_utils.LoadPlanJson class method)
(PartSegCore.io_utils.LoadPoints class method)
(PartSegCore.mask.io_functions.LoadROI class method)
(PartSegCore.mask.io_functions.LoadROIFromTIFF class method)
(PartSegCore.mask.io_functions.LoadROIImage class method)
(PartSegCore.mask.io_functions.LoadROIParameters class method)
(PartSegCore.mask.io_functions.LoadStackImage class method)
(PartSegCore.mask.io_functions.LoadStackImageWithMask class method)
load_matadata_part() (in module PartSegCore.io_utils)
load_metadata() (in module PartSegCore.mask.io_functions)
(PartSeg.common_backend.base_settings.BaseSettings static method)
load_metadata_part() (in module PartSegCore.io_utils)
LoadBase (class in PartSegCore.io_utils)
LoadPlanExcel (class in PartSegCore.io_utils)
LoadPlanJson (class in PartSegCore.io_utils)
LoadPoints (class in PartSegCore.io_utils)
LoadROI (class in PartSegCore.mask.io_functions)
LoadROIFromTIFF (class in PartSegCore.mask.io_functions)
LoadROIImage (class in PartSegCore.mask.io_functions)
LoadROIParameters (class in PartSegCore.mask.io_functions)
LoadStackImage (class in PartSegCore.mask.io_functions)
LoadStackImageWithMask (class in PartSegCore.mask.io_functions)
LockedInfoWidget (class in PartSeg.common_gui.channel_control)
lower (PartSegCore.roi_info.BoundInfo attribute)
LowerThresholdAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
LowerThresholdFlowAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
LowerThresholdMultiScaleOpening (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
M
ManualThreshold (class in PartSegCore.segmentation.threshold)
mask (PartSeg.common_backend.base_settings.BaseSettings property)
(PartSegCore.analysis.calculation_plan.NodeType attribute)
mask() (PartSeg.common_gui.algorithms_description.BaseAlgorithmSettingsWidget method)
mask1 (PartSegCore.analysis.calculation_plan.MaskIntersection attribute)
(PartSegCore.analysis.calculation_plan.MaskSum attribute)
mask2 (PartSegCore.analysis.calculation_plan.MaskIntersection attribute)
(PartSegCore.analysis.calculation_plan.MaskSum attribute)
mask_algorithm (PartSegCore.register.RegisterEnum attribute)
mask_changed (PartSeg.common_backend.base_settings.BaseSettings attribute)
mask_components (PartSegCore.analysis.measurement_calculation.ComponentsInfo attribute)
mask_load (PartSegCore.register.RegisterEnum attribute)
Mask_project (PartSegCore.analysis.calculation_plan.RootType attribute)
mask_property (PartSegCore.analysis.calculation_plan.MaskCreate attribute)
mask_save_components (PartSegCore.register.RegisterEnum attribute)
mask_save_parameters (PartSegCore.register.RegisterEnum attribute)
mask_save_segmentation (PartSegCore.register.RegisterEnum attribute)
MaskControl (class in PartSeg.common_gui.advanced_tabs)
MaskDistanceSplit (class in PartSegCore.mask_partition_utils)
(class in PartSegCore.segmentation.restartable_segmentation_algorithms)
MaskProjectTuple (class in PartSegCore.mask.io_functions)
max_holes_size (PartSegCore.mask_create.MaskProperty attribute)
MaximumDistanceCore (class in PartSegCore.segmentation.threshold)
MaximumEntropyThreshold (class in PartSegCore.segmentation.threshold)
MaximumPixelBrightness (class in PartSegCore.analysis.measurement_calculation)
MeanPixelBrightness (class in PartSegCore.analysis.measurement_calculation)
measurement (PartSegCore.analysis.calculation_plan.NodeType attribute)
MEASUREMENT_DICT (in module PartSegCore.analysis.measurement_calculation)
measurement_profile (PartSegCore.analysis.calculation_plan.MeasurementCalculate attribute)
MeasurementMethodBase (class in PartSegCore.analysis.measurement_base)
MeasurementResult (class in PartSegCore.analysis.measurement_calculation)
median() (in module PartSegCore.image_operations)
MedianPixelBrightness (class in PartSegCore.analysis.measurement_calculation)
merge() (PartSegImage.Image method)
MguiChannelComboBox (class in PartSeg.common_gui.universal_gui_part)
MinimumPixelBrightness (class in PartSegCore.analysis.measurement_calculation)
minimumSizeHint() (PartSeg.common_gui.channel_control.ColorComboBox method)
module
PartSeg.common_backend
PartSeg.common_backend.abstract_class
PartSeg.common_backend.base_argparser
PartSeg.common_backend.base_settings
PartSeg.common_backend.except_hook
PartSeg.common_backend.load_backup
PartSeg.common_backend.partially_const_dict
PartSeg.common_backend.progress_thread
PartSeg.common_backend.segmentation_thread
PartSeg.common_gui.advanced_tabs
PartSeg.common_gui.algorithms_description
PartSeg.common_gui.channel_control
PartSeg.common_gui.colormap_creator
PartSeg.common_gui.error_report
PartSeg.common_gui.main_window
PartSeg.common_gui.numpy_qimage
PartSeg.common_gui.universal_gui_part
PartSeg.state_store
PartSegCore.algorithm_describe_base
PartSegCore.analysis.algorithm_description
PartSegCore.analysis.batch_processing.batch_backend
PartSegCore.analysis.batch_processing.parallel_backend
PartSegCore.analysis.calculation_plan
PartSegCore.analysis.measurement_base
PartSegCore.analysis.measurement_calculation
PartSegCore.color_image
PartSegCore.image_operations
PartSegCore.io_utils
PartSegCore.json_hooks
PartSegCore.mask.io_functions
PartSegCore.mask_create
PartSegCore.mask_partition_utils
PartSegCore.project_info
PartSegCore.register
PartSegCore.roi_info
PartSegCore.segmentation
PartSegCore.segmentation.restartable_segmentation_algorithms
PartSegCore.segmentation.threshold
PartSegCore.segmentation.watershed
PartSegImage
PartSegImage.image_reader
Moment (class in PartSegCore.analysis.measurement_calculation)
MomentsThreshold (class in PartSegCore.segmentation.threshold)
mouseDoubleClickEvent() (PartSeg.common_gui.colormap_creator.ColormapEdit method)
(PartSeg.common_gui.universal_gui_part.InfoLabel method)
mouseMoveEvent() (PartSeg.common_gui.channel_control.ColorComboBox method)
(PartSeg.common_gui.colormap_creator.ColormapEdit method)
mousePressEvent() (PartSeg.common_gui.channel_control.ColorComboBox method)
(PartSeg.common_gui.colormap_creator.ColormapEdit method)
mouseReleaseEvent() (PartSeg.common_gui.colormap_creator.ColormapEdit method)
mp_eq() (in module PartSegCore.mask_create)
MSOWatershed (class in PartSegCore.segmentation.watershed)
MultipleOtsu (class in PartSegCore.segmentation.threshold)
MultipleOtsuThreshold (class in PartSegCore.segmentation.threshold)
my_excepthook() (in module PartSeg.common_backend.except_hook)
N
name (PartSegCore.algorithm_describe_base.AlgorithmSelection attribute)
(PartSegCore.algorithm_describe_base.ROIExtractionProfile attribute)
(PartSegCore.analysis.algorithm_description.AnalysisAlgorithmSelection attribute)
(PartSegCore.analysis.calculation_plan.MaskBase attribute)
(PartSegCore.analysis.calculation_plan.MaskMapper attribute)
(PartSegCore.analysis.calculation_plan.MaskUse attribute)
(PartSegCore.analysis.calculation_plan.MeasurementCalculate property)
(PartSegCore.analysis.measurement_base.Leaf attribute)
(PartSegCore.analysis.measurement_base.MeasurementEntry attribute)
(PartSegCore.segmentation.threshold.DoubleThresholdSelection attribute)
(PartSegCore.segmentation.threshold.RangeThresholdSelection attribute)
(PartSegCore.segmentation.threshold.ThresholdSelection attribute)
(PartSegCore.segmentation.watershed.WatershedSelection attribute)
name_dict (PartSegCore.analysis.calculation_plan.MaskFile attribute)
name_prefix (PartSegCore.analysis.calculation_plan.MeasurementCalculate attribute)
name_to_scalar (in module PartSegImage.image_reader)
napari_get_settings() (in module PartSeg.common_backend)
napari_image_repr() (in module PartSeg.common_backend.base_argparser)
need_channel() (PartSegCore.analysis.measurement_base.MeasurementMethodBase class method)
(PartSegCore.analysis.measurement_calculation.DistanceMaskROI class method)
(PartSegCore.analysis.measurement_calculation.FirstPrincipalAxisLength class method)
(PartSegCore.analysis.measurement_calculation.Haralick class method)
(PartSegCore.analysis.measurement_calculation.MaximumPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.MeanPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.MedianPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.MinimumPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.Moment class method)
(PartSegCore.analysis.measurement_calculation.PixelBrightnessSum class method)
(PartSegCore.analysis.measurement_calculation.RimPixelBrightnessSum class method)
(PartSegCore.analysis.measurement_calculation.SecondPrincipalAxisLength class method)
(PartSegCore.analysis.measurement_calculation.SplitOnPartPixelBrightnessSum class method)
(PartSegCore.analysis.measurement_calculation.StandardDeviationOfPixelBrightness class method)
(PartSegCore.analysis.measurement_calculation.ThirdPrincipalAxisLength class method)
need_mask() (PartSegCore.analysis.measurement_base.Leaf method)
(PartSegCore.analysis.measurement_base.Node method)
NeighType (class in PartSegCore.segmentation.watershed)
NO (PartSegCore.image_operations.RadiusType attribute)
NodeType (class in PartSegCore.analysis.calculation_plan)
noise_filter() (PartSegCore.segmentation.NoiseFilteringBase class method)
noise_filtering (PartSegCore.register.RegisterEnum attribute)
noise_remove_image_part (PartSeg.common_backend.base_settings.ImageSettings property)
NoiseFilteringBase (class in PartSegCore.segmentation)
NoiseFilterType (class in PartSegCore.image_operations)
none (PartSegCore.analysis.calculation_plan.NodeType attribute)
NotSupportedImage
number_of_files() (PartSegCore.io_utils.LoadBase class method)
(PartSegCore.mask.io_functions.LoadStackImageWithMask class method)
NumpyQImage (class in PartSeg.common_gui.numpy_qimage)
O
ObsepImageReader (class in PartSegImage)
(class in PartSegImage.image_reader)
OifImagReader (class in PartSegImage)
(class in PartSegImage.image_reader)
OneThresholdAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
op (PartSegCore.analysis.measurement_base.Node attribute)
open_tar_file() (in module PartSegCore.io_utils)
Operations (class in PartSegCore.analysis.calculation_plan)
OtsuSegment (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
OtsuThreshold (class in PartSegCore.segmentation.threshold)
overwrite_voxel_size (PartSegCore.analysis.calculation_plan.FileCalculation property)
P
paint() (PartSeg.common_gui.channel_control.ColorStyledDelegate method)
paintEvent() (PartSeg.common_gui.algorithms_description.SubAlgorithmWidget method)
(PartSeg.common_gui.channel_control.BlurInfoWidget method)
(PartSeg.common_gui.channel_control.ColorComboBox method)
(PartSeg.common_gui.channel_control.GammaInfoWidget method)
(PartSeg.common_gui.channel_control.LockedInfoWidget method)
(PartSeg.common_gui.colormap_creator.ChannelPreview method)
(PartSeg.common_gui.colormap_creator.ColormapEdit method)
(PartSeg.common_gui.universal_gui_part.Hline method)
(PartSeg.common_gui.universal_gui_part.ProgressCircle method)
parameters (PartSegCore.analysis.measurement_base.Leaf attribute)
parameters_changed() (PartSeg.common_gui.channel_control.ColorComboBoxGroup method)
parse_args() (PartSeg.common_backend.base_argparser.CustomParser method)
parse_file() (PartSegCore.segmentation.watershed.WatershedSelection class method)
parse_map() (PartSegCore.analysis.calculation_plan.MaskFile method)
parse_obj() (PartSegCore.segmentation.watershed.WatershedSelection class method)
parse_raw() (PartSegCore.segmentation.watershed.WatershedSelection class method)
partial() (PartSegCore.io_utils.LoadBase class method)
(PartSegCore.io_utils.LoadPoints class method)
(PartSegCore.mask.io_functions.LoadROI class method)
PartiallyConstDict (class in PartSeg.common_backend.partially_const_dict)
PartSeg.common_backend
module
PartSeg.common_backend.abstract_class
module
PartSeg.common_backend.base_argparser
module
PartSeg.common_backend.base_settings
module
PartSeg.common_backend.except_hook
module
PartSeg.common_backend.load_backup
module
PartSeg.common_backend.partially_const_dict
module
PartSeg.common_backend.progress_thread
module
PartSeg.common_backend.segmentation_thread
module
PartSeg.common_gui.advanced_tabs
module
PartSeg.common_gui.algorithms_description
module
PartSeg.common_gui.channel_control
module
PartSeg.common_gui.colormap_creator
module
PartSeg.common_gui.error_report
module
PartSeg.common_gui.main_window
module
PartSeg.common_gui.numpy_qimage
module
PartSeg.common_gui.universal_gui_part
module
PartSeg.state_store
module
PartSegCore.algorithm_describe_base
module
PartSegCore.analysis.algorithm_description
module
PartSegCore.analysis.batch_processing.batch_backend
module
PartSegCore.analysis.batch_processing.parallel_backend
module
PartSegCore.analysis.calculation_plan
module
PartSegCore.analysis.measurement_base
module
PartSegCore.analysis.measurement_calculation
module
PartSegCore.color_image
module
PartSegCore.image_operations
module
PartSegCore.io_utils
module
PartSegCore.json_hooks
module
PartSegCore.mask.io_functions
module
PartSegCore.mask_create
module
PartSegCore.mask_partition_utils
module
PartSegCore.project_info
module
PartSegCore.register
module
PartSegCore.roi_info
module
PartSegCore.segmentation
module
PartSegCore.segmentation.restartable_segmentation_algorithms
module
PartSegCore.segmentation.threshold
module
PartSegCore.segmentation.watershed
module
PartSegEncoder (class in PartSegCore.json_hooks)
PartSegImage
module
PartSegImage.image_reader
module
path_to_file (PartSegCore.analysis.batch_processing.batch_backend.ResponseData attribute)
(PartSegCore.analysis.calculation_plan.MaskFile attribute)
PathDistanceWatershed (class in PartSegCore.segmentation.watershed)
PathWatershed (class in PartSegCore.segmentation.watershed)
PColormapCreator (class in PartSeg.common_gui.colormap_creator)
PColormapCreatorMid (class in PartSeg.common_gui.colormap_creator)
PColormapList (class in PartSeg.common_gui.colormap_creator)
per_component (PartSegCore.analysis.measurement_base.Leaf attribute)
PerComponent (class in PartSegCore.analysis.measurement_base)
PixelBrightnessSum (class in PartSegCore.analysis.measurement_calculation)
PlanChanges (class in PartSegCore.analysis.calculation_plan)
plane_shape (PartSegImage.Image property)
points (PartSeg.common_backend.base_settings.BaseSettings property)
(PartSegCore.io_utils.PointsInfo attribute)
points_changed (PartSeg.common_backend.base_settings.BaseSettings attribute)
PointsInfo (class in PartSegCore.io_utils)
power (PartSegCore.analysis.measurement_base.Leaf attribute)
prepare_result() (PartSegCore.segmentation.restartable_segmentation_algorithms.ThresholdBaseAlgorithm method)
pretty_print() (PartSegCore.algorithm_describe_base.ROIExtractionProfile method)
(PartSegCore.analysis.measurement_base.Leaf method)
(PartSegCore.analysis.measurement_base.Node method)
print_dict() (PartSegCore.algorithm_describe_base.ROIExtractionProfile class method)
profile_data_changed (PartSeg.common_backend.base_settings.ViewSettings attribute)
ProfileSelect (class in PartSeg.common_gui.algorithms_description)
progress_signal (PartSeg.common_backend.segmentation_thread.SegmentationThread attribute)
ProgressCircle (class in PartSeg.common_gui.universal_gui_part)
ProgressTread (class in PartSeg.common_backend.progress_thread)
ProhibitedDivision
Project (PartSegCore.analysis.calculation_plan.RootType attribute)
ProjectInfoBase (class in PartSegCore.project_info)
proper_path() (in module PartSeg.common_backend.base_argparser)
proper_suffix() (in module PartSeg.common_backend.base_argparser)
Q
qcolor_from_color() (in module PartSeg.common_gui.colormap_creator)
QMessageFromException (class in PartSeg.common_gui.error_report)
QtAlgorithmProperty (class in PartSeg.common_gui.algorithms_description)
QtMeta (class in PartSeg.common_backend.abstract_class)
question() (PartSeg.common_gui.error_report.QMessageFromException class method)
R
R2D (PartSegCore.image_operations.RadiusType attribute)
R3D (PartSegCore.image_operations.RadiusType attribute)
RadiusType (class in PartSegCore.image_operations)
RangeThreshold (class in PartSegCore.segmentation.threshold)
RangeThresholdAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
read() (PartSegImage.CziImageReader method)
(PartSegImage.GenericImageReader method)
(PartSegImage.image_reader.BaseImageReader method)
(PartSegImage.image_reader.BaseImageReaderBuffer method)
(PartSegImage.image_reader.CziImageReader method)
(PartSegImage.image_reader.GenericImageReader method)
(PartSegImage.image_reader.ObsepImageReader method)
(PartSegImage.image_reader.OifImagReader method)
(PartSegImage.image_reader.TiffImageReader method)
(PartSegImage.ObsepImageReader method)
(PartSegImage.OifImagReader method)
(PartSegImage.TiffImageReader method)
read_drop() (PartSeg.common_gui.main_window.BaseMainWindow method)
read_image() (PartSegImage.CziImageReader class method)
(PartSegImage.GenericImageReader class method)
(PartSegImage.image_reader.BaseImageReader class method)
(PartSegImage.image_reader.BaseImageReaderBuffer class method)
(PartSegImage.ObsepImageReader class method)
(PartSegImage.OifImagReader class method)
(PartSegImage.TiffImageReader class method)
recursive_calculation() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
refresh() (PartSeg.common_gui.colormap_creator.ColormapEdit method)
Register (class in PartSegCore.algorithm_describe_base)
register() (in module PartSegCore.register)
(PartSegCore.algorithm_describe_base.AlgorithmSelection class method)
(PartSegCore.algorithm_describe_base.Register method)
(PartSegCore.segmentation.watershed.WatershedSelection class method)
register_widget() (PartSeg.common_gui.channel_control.ChannelProperty method)
RegisterEnum (class in PartSegCore.register)
reload_algorithm_action() (PartSeg.common_gui.advanced_tabs.DevelopTab method)
remove_hide_element() (PartSeg.common_gui.collapse_checkbox.CollapseCheckbox method)
remove_node (PartSegCore.analysis.calculation_plan.PlanChanges attribute)
remove_request (PartSeg.common_gui.colormap_creator.ChannelPreview attribute)
remove_signal (PartSeg.common_gui.colormap_creator.ColormapList attribute)
RenyiEntropyThreshold (class in PartSegCore.segmentation.threshold)
reorder_axes() (PartSegImage.Image class method)
rep (PartSegCore.analysis.calculation_plan.MaskSub attribute)
replace_() (PartSegCore.analysis.measurement_base.Leaf method)
replace_node (PartSegCore.analysis.calculation_plan.PlanChanges attribute)
report_errors (in module PartSeg.state_store)
request_load_files (PartSeg.common_backend.base_settings.BaseSettings attribute)
resizeEvent() (PartSeg.common_gui.algorithms_description.BaseAlgorithmSettingsWidget method)
(PartSeg.common_gui.colormap_creator.ColormapList method)
resolution (in module PartSegCore.color_image)
ResponseData (class in PartSegCore.analysis.batch_processing.batch_backend)
RestartableAlgorithm (class in PartSegCore.segmentation)
(class in PartSegCore.segmentation.restartable_segmentation_algorithms)
result_prefix (PartSegCore.analysis.calculation_plan.FileCalculation property)
return_order() (PartSegImage.CziImageReader class method)
(PartSegImage.GenericImageReader class method)
(PartSegImage.image_reader.BaseImageReader class method)
(PartSegImage.ObsepImageReader class method)
(PartSegImage.OifImagReader class method)
(PartSegImage.TiffImageReader class method)
reversed_mask (PartSegCore.mask_create.MaskProperty attribute)
right (PartSegCore.analysis.measurement_base.Node attribute)
RimPixelBrightnessSum (class in PartSegCore.analysis.measurement_calculation)
RimVolume (class in PartSegCore.analysis.measurement_calculation)
roi (PartSeg.common_backend.base_settings.ImageSettings property)
roi_analysis_segmentation_algorithm (PartSegCore.register.RegisterEnum attribute)
roi_changed (PartSeg.common_backend.base_settings.ImageSettings attribute)
roi_clean (PartSeg.common_backend.base_settings.ImageSettings attribute)
roi_components (PartSegCore.analysis.measurement_calculation.ComponentsInfo attribute)
roi_info (PartSeg.common_backend.base_settings.ImageSettings property)
roi_mask_segmentation_algorithm (PartSegCore.register.RegisterEnum attribute)
ROIExtractionAlgorithm (class in PartSegCore.segmentation)
ROIExtractionProfileMeta (class in PartSegCore.algorithm_describe_base)
ROIExtractionResult (class in PartSegCore.segmentation)
ROIInfo (class in PartSegCore.roi_info)
ROINeighbourhoodROI (class in PartSegCore.analysis.measurement_calculation)
root (PartSegCore.analysis.calculation_plan.NodeType attribute)
RootType (class in PartSegCore.analysis.calculation_plan)
run() (PartSeg.common_backend.progress_thread.ExecuteFunctionThread method)
(PartSeg.common_backend.segmentation_thread.SegmentationThread method)
(PartSegCore.analysis.batch_processing.parallel_backend.BatchWorker method)
S
safe_repr() (in module PartSeg.common_backend.base_argparser)
save (PartSegCore.analysis.calculation_plan.NodeType attribute)
save() (PartSeg.common_gui.colormap_creator.ColormapSave class method)
(PartSegCore.io_utils.SaveBase class method)
(PartSegCore.io_utils.SaveMaskAsTiff class method)
(PartSegCore.io_utils.SaveROIAsNumpy class method)
(PartSegCore.io_utils.SaveROIAsTIFF class method)
(PartSegCore.io_utils.SaveScreenshot class method)
(PartSegCore.mask.io_functions.SaveComponents class method)
(PartSegCore.mask.io_functions.SaveComponentsImagej class method)
(PartSegCore.mask.io_functions.SaveParametersJSON class method)
(PartSegCore.mask.io_functions.SaveROI class method)
(PartSegImage.IMAGEJImageWriter class method)
(PartSegImage.ImageWriter class method)
save_components (PartSegCore.mask_create.MaskProperty attribute)
save_folder (in module PartSeg.state_store)
save_locations_keys (PartSeg.common_backend.base_settings.BaseSettings attribute)
save_mask() (PartSegImage.IMAGEJImageWriter class method)
(PartSegImage.ImageWriter class method)
SaveBase (class in PartSegCore.io_utils)
SaveComponents (class in PartSegCore.mask.io_functions)
SaveComponentsImagej (class in PartSegCore.mask.io_functions)
SaveMaskAsTiff (class in PartSegCore.io_utils)
SaveParametersJSON (class in PartSegCore.mask.io_functions)
SaveROI (class in PartSegCore.mask.io_functions)
SaveROIAsNumpy (class in PartSegCore.io_utils)
SaveROIAsTIFF (class in PartSegCore.io_utils)
SaveScreenshot (class in PartSegCore.io_utils)
SaveSettingsDescription (class in PartSeg.common_backend.base_settings)
schema() (PartSegCore.segmentation.watershed.WatershedSelection class method)
schema_json() (PartSegCore.segmentation.watershed.WatershedSelection class method)
SecondPrincipalAxisLength (class in PartSegCore.analysis.measurement_calculation)
segment (PartSegCore.analysis.calculation_plan.NodeType attribute)
segmentation (PartSeg.common_backend.base_settings.ImageSettings property)
segmentation_info (PartSeg.common_backend.base_settings.ImageSettings property)
SegmentationThread (class in PartSeg.common_backend.segmentation_thread)
SegmentationType (class in PartSegCore.io_utils)
selected_colormaps (PartSeg.common_gui.channel_control.ColorComboBoxGroup property)
selection_changed (PartSeg.common_gui.colormap_creator.ChannelPreview attribute)
send_info() (PartSeg.common_gui.channel_control.ChannelProperty method)
send_report() (PartSeg.common_gui.error_report.ErrorDialog method)
set() (PartSeg.common_backend.base_settings.BaseSettings method)
set_algorithm() (PartSeg.common_backend.base_settings.BaseSettings method)
set_blocked() (PartSeg.common_gui.colormap_creator.ChannelPreview method)
set_blur (PartSeg.common_gui.channel_control.ColorComboBox property)
set_channel_colormap_name() (PartSeg.common_backend.base_settings.ViewSettings method)
set_channel_info() (PartSeg.common_backend.base_settings.ViewSettings method)
set_channels() (PartSeg.common_gui.channel_control.ColorComboBoxGroup method)
set_chosen() (PartSeg.common_gui.colormap_creator.ChannelPreview method)
set_color() (PartSeg.common_gui.channel_control.ColorComboBox method)
set_colormap() (PartSeg.common_gui.colormap_creator.ColormapCreator method)
set_filename() (PartSegCore.analysis.measurement_calculation.MeasurementResult method)
set_fraction() (PartSeg.common_gui.universal_gui_part.ProgressCircle method)
set_gamma (PartSeg.common_gui.channel_control.ColorComboBox property)
set_history() (PartSeg.common_backend.base_settings.BaseSettings method)
set_image() (PartSeg.common_backend.segmentation_thread.SegmentationThread method)
set_in_profile() (PartSeg.common_backend.base_settings.ViewSettings method)
set_lock (PartSeg.common_gui.channel_control.ColorComboBox property)
set_map_path() (PartSegCore.analysis.calculation_plan.MaskFile method)
set_mask() (PartSeg.common_backend.segmentation_thread.SegmentationThread method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.RestartableAlgorithm method)
(PartSegCore.segmentation.RestartableAlgorithm method)
(PartSegCore.segmentation.ROIExtractionAlgorithm method)
(PartSegCore.segmentation.StackAlgorithm method)
(PartSegImage.Image method)
set_number_of_process() (PartSegCore.analysis.batch_processing.parallel_backend.BatchManager method)
set_number_of_workers() (PartSegCore.analysis.batch_processing.batch_backend.CalculationManager method)
set_parameters() (PartSeg.common_backend.segmentation_thread.SegmentationThread method)
set_parent() (PartSeg.common_backend.base_settings.ImageSettings method)
set_project_info() (PartSeg.common_backend.base_settings.BaseSettings method)
set_segmentation_result() (PartSeg.common_backend.base_settings.BaseSettings method)
set_selection() (PartSeg.common_gui.channel_control.ColorComboBox method)
set_spacing() (PartSegImage.Image method)
set_state() (PartSeg.common_gui.colormap_creator.ColormapList method)
set_value() (PartSeg.common_gui.algorithms_description.QtAlgorithmProperty method)
(PartSeg.common_gui.universal_gui_part.ChannelComboBox method)
(PartSeg.common_gui.universal_gui_part.EnumComboBox method)
SettingsValue (class in PartSegCore.analysis.measurement_calculation)
setup_ui() (PartSeg.common_gui.error_report.ErrorDialog method)
ShanbhagThreshold (class in PartSegCore.segmentation.threshold)
shape (PartSegImage.Image property)
SheetData (class in PartSegCore.analysis.batch_processing.batch_backend)
short_name (PartSegCore.analysis.calculation_plan.Save attribute)
show_about_dialog() (PartSeg.common_gui.main_window.BaseMainWindow static method)
show_error() (in module PartSeg.common_backend.except_hook)
show_error_dialog (in module PartSeg.state_store)
show_signal (PartSeg.common_gui.main_window.BaseMainWindow attribute)
show_warning() (in module PartSeg.common_backend.except_hook)
showEvent() (PartSeg.common_gui.algorithms_description.SubAlgorithmWidget method)
(PartSeg.common_gui.channel_control.ColorComboBox method)
(PartSeg.common_gui.colormap_creator.ColormapList method)
(PartSeg.common_gui.main_window.BaseMainWindow method)
(PartSeg.common_gui.universal_gui_part.InfoLabel method)
simple_mask() (PartSegCore.mask_create.MaskProperty class method)
SitkThreshold (class in PartSegCore.segmentation.threshold)
sizeHint() (PartSeg.common_gui.channel_control.ColorStyledDelegate method)
(PartSeg.common_gui.universal_gui_part.TextShow method)
sizes (PartSeg.common_backend.base_settings.ImageSettings property)
Spacing (class in PartSeg.common_gui.universal_gui_part)
spacing (PartSegImage.Image property)
spawn_worker() (in module PartSegCore.analysis.batch_processing.parallel_backend)
Sphericity (class in PartSegCore.analysis.measurement_calculation)
split() (PartSegCore.mask_partition_utils.MaskDistanceSplit static method)
SplitOnPartPixelBrightnessSum (class in PartSegCore.analysis.measurement_calculation)
SplitOnPartVolume (class in PartSegCore.analysis.measurement_calculation)
sprawl (PartSegCore.register.RegisterEnum attribute)
sprawl() (PartSegCore.segmentation.BaseWatershed class method)
(PartSegCore.segmentation.watershed.BaseWatershed class method)
(PartSegCore.segmentation.watershed.DistanceWatershed class method)
(PartSegCore.segmentation.watershed.FDTWatershed class method)
(PartSegCore.segmentation.watershed.MSOWatershed class method)
(PartSegCore.segmentation.watershed.PathDistanceWatershed class method)
(PartSegCore.segmentation.watershed.PathWatershed class method)
stack_pos (PartSegImage.Image property)
StackAlgorithm (class in PartSegCore.segmentation)
StandardDeviationOfPixelBrightness (class in PartSegCore.analysis.measurement_calculation)
start() (PartSeg.common_backend.segmentation_thread.SegmentationThread method)
state_changed (PartSeg.common_gui.colormap_creator.ChannelPreview property)
step_changed (PartSeg.common_backend.progress_thread.ProgressTread attribute)
step_load_mask() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
step_mask_create() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
step_mask_operation() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
step_mask_use() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
step_measurement() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
step_save() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
step_segmentation() (PartSegCore.analysis.batch_processing.batch_backend.CalculationProcess method)
style_sheet (PartSeg.common_backend.base_settings.ViewSettings property)
SubAlgorithmWidget (class in PartSeg.common_gui.algorithms_description)
SubprocessOrder (class in PartSegCore.analysis.batch_processing.parallel_backend)
substitute() (PartSegImage.Image method)
suffix (PartSegCore.analysis.calculation_plan.MaskSuffix attribute)
(PartSegCore.analysis.calculation_plan.Save attribute)
Surface (class in PartSegCore.analysis.measurement_calculation)
swap_time_and_stack() (PartSegImage.Image method)
SwapTimeStackException
T
TextShow (class in PartSeg.common_gui.universal_gui_part)
theme (PartSeg.common_backend.base_settings.ViewSettings property)
theme_changed (PartSeg.common_backend.base_settings.ViewSettings attribute)
theme_list() (PartSeg.common_backend.base_settings.ViewSettings static method)
theme_name (PartSeg.common_backend.base_settings.BaseSettings property)
(PartSeg.common_backend.base_settings.ViewSettings property)
ThirdPrincipalAxisLength (class in PartSegCore.analysis.measurement_calculation)
threshold (PartSegCore.register.RegisterEnum attribute)
threshold_operator() (PartSegCore.segmentation.restartable_segmentation_algorithms.LowerThresholdAlgorithm static method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.LowerThresholdFlowAlgorithm static method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.LowerThresholdMultiScaleOpening static method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.UpperThresholdAlgorithm static method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.UpperThresholdFlowAlgorithm static method)
(PartSegCore.segmentation.restartable_segmentation_algorithms.UpperThresholdMultiScaleOpening static method)
ThresholdBaseAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
TiffFileException
,
[1]
TiffImageReader (class in PartSegImage)
(class in PartSegImage.image_reader)
time_pos (PartSegImage.Image property)
TimeAndStackException
times (PartSegImage.Image property)
to_binary_image() (in module PartSegCore.image_operations)
TriangleThreshold (class in PartSegCore.segmentation.threshold)
TwoLevelThresholdBaseAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
U
units (PartSegCore.analysis.calculation_plan.MeasurementCalculate attribute)
update_array_shape() (PartSegImage.CziImageReader class method)
(PartSegImage.GenericImageReader class method)
(PartSegImage.image_reader.BaseImageReader class method)
(PartSegImage.image_reader.CziImageReader class method)
(PartSegImage.ObsepImageReader class method)
(PartSegImage.OifImagReader class method)
(PartSegImage.TiffImageReader class method)
update_channels() (PartSeg.common_gui.channel_control.ColorComboBoxGroup method)
update_class_path() (PartSegCore.algorithm_describe_base.AlgorithmSelection class method)
(PartSegCore.segmentation.watershed.WatershedSelection class method)
update_color_list() (PartSeg.common_gui.channel_control.ColorComboBoxGroup method)
update_colors() (PartSeg.common_gui.channel_control.ColorComboBoxGroup method)
update_forward_refs() (PartSegCore.segmentation.watershed.WatershedSelection class method)
update_values() (PartSegCore.algorithm_describe_base.AlgorithmSelection class method)
(PartSegCore.segmentation.watershed.WatershedSelection class method)
upper (PartSegCore.roi_info.BoundInfo attribute)
UpperThresholdAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
UpperThresholdFlowAlgorithm (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
UpperThresholdMultiScaleOpening (class in PartSegCore.segmentation.restartable_segmentation_algorithms)
uuid (PartSegCore.analysis.calculation_plan.FileCalculation property)
V
validate() (PartSegCore.segmentation.watershed.WatershedSelection class method)
validate_values() (PartSegCore.algorithm_describe_base.ROIExtractionProfile class method)
value (PartSegImage.Channel property)
values (PartSeg.common_backend.base_settings.SaveSettingsDescription attribute)
(PartSegCore.algorithm_describe_base.AlgorithmSelection attribute)
(PartSegCore.algorithm_describe_base.ROIExtractionProfile attribute)
(PartSegCore.analysis.algorithm_description.AnalysisAlgorithmSelection attribute)
(PartSegCore.analysis.batch_processing.batch_backend.ResponseData attribute)
(PartSegCore.analysis.calculation_plan.Save attribute)
(PartSegCore.segmentation.threshold.DoubleThresholdSelection attribute)
(PartSegCore.segmentation.threshold.RangeThresholdSelection attribute)
(PartSegCore.segmentation.threshold.ThresholdSelection attribute)
(PartSegCore.segmentation.watershed.WatershedSelection attribute)
values() (PartSegCore.algorithm_describe_base.Register method)
verify_image() (PartSeg.common_backend.base_settings.BaseSettings static method)
verify_mask() (PartSegImage.image_reader.TiffImageReader static method)
(PartSegImage.TiffImageReader static method)
ViewSettings (class in PartSeg.common_backend.base_settings)
visibility_colormap_change (PartSeg.common_gui.colormap_creator.ColormapList attribute)
Volume (class in PartSegCore.analysis.measurement_calculation)
voxel_size (PartSegCore.analysis.calculation_plan.FileCalculation property)
(PartSegImage.Image property)
Voxels (class in PartSegCore.analysis.measurement_calculation)
VoxelSize (class in PartSegCore.analysis.measurement_calculation)
W
warning() (PartSeg.common_gui.error_report.QMessageFromException class method)
with_traceback() (PartSegImage.TiffFileException method)
writing_finished() (PartSegCore.analysis.batch_processing.batch_backend.DataWriter method)
WrongFileTypeException
wrote_data() (PartSegCore.analysis.batch_processing.batch_backend.FileData method)
wrote_data_to_file() (PartSegCore.analysis.batch_processing.batch_backend.FileData method)
Y
YenThreshold (class in PartSegCore.segmentation.threshold)
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