PartSegCore.analysis¶
This module contains all utils specific for segmentation analysis task
- PartSegCore.analysis.batch_processing
- PartSegCore.analysis.calculation_plan
- PartSegCore.analysis.measurement_base
- PartSegCore.analysis.measurement_calculation
ColocalizationMeasurement
ColocalizationMeasurementParameters
Compactness
ComponentBoundingBox
ComponentsInfo
ComponentsNumber
CorrelationEnum
Diameter
DiameterOld
DistanceMaskROI
DistanceMaskROIParameters
DistancePoint
DistanceROIROI
DistanceROIROIParameters
FirstPrincipalAxisLength
GetROIAnnotationType
GetROIAnnotationTypeParameters
Haralick
HaralickEnum
HaralickParameters
MEASUREMENT_DICT
MaximumPixelBrightness
MeanPixelBrightness
MeasurementProfile
MeasurementResult
MedianPixelBrightness
MinimumPixelBrightness
Moment
PixelBrightnessSum
ProhibitedDivision
ROINeighbourhoodROI
ROINeighbourhoodROIParameters
RimPixelBrightnessSum
RimVolume
SecondPrincipalAxisLength
SettingsValue
Sphericity
SplitOnPartParameters
SplitOnPartPixelBrightnessSum
SplitOnPartVolume
StandardDeviationOfPixelBrightness
Surface
ThirdPrincipalAxisLength
Volume
VoxelSize
Voxels
double_normal()
empty_fun()
hash_fun_call_name()
iterative_double_normal()
PartSegCore.analysis.algorithm_description¶
- pydantic model PartSegCore.analysis.algorithm_description.AnalysisAlgorithmSelection[source]¶
Bases:
AlgorithmSelection
Register for segmentation method visible in PartSeg ROI Analysis.
Show JSON schema
{ "title": "AnalysisAlgorithmSelection", "description": "Register for segmentation method visible in PartSeg ROI Analysis.", "type": "object", "properties": { "name": { "title": "Name", "type": "string" }, "values": { "anyOf": [ { "type": "object" }, { "$ref": "#/$defs/BaseModel" } ], "title": "Values" }, "class_path": { "default": "", "title": "Class Path", "type": "string" } }, "$defs": { "BaseModel": { "properties": {}, "title": "BaseModel", "type": "object" } }, "additionalProperties": false, "required": [ "name", "values" ] }
- Config:
extra: str = forbid
smart_union: bool = True
- Fields:
- model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}¶
A dictionary of computed field names and their corresponding ComputedFieldInfo objects.