PartSegCore.analysis

This module contains all utils specific for segmentation analysis task

Module with own documentation contents:

• PartSegCore.analysis.batch_processing
  • PartSegCore.analysis.batch_processing.batch_backend
  • PartSegCore.analysis.batch_processing.parallel_backend
• PartSegCore.analysis.calculation_plan
  • BaseCalculation
  • Calculation
  • CalculationPlan
  • CalculationTree
  • FileCalculation
  • MaskBase
  • MaskCreate
  • MaskFile
  • MaskIntersection
  • MaskMapper
  • MaskSub
  • MaskSuffix
  • MaskSum
  • MaskUse
  • MeasurementCalculate
  • NodeType
  • Operations
  • PlanChanges
  • RootType
  • Save
  • get_save_path()
• PartSegCore.analysis.measurement_base
  • AreaType
  • Leaf
  • MeasurementEntry
  • MeasurementMethodBase
  • Node
  • PerComponent
  • has_mask_components()
  • has_roi_components()
• PartSegCore.analysis.measurement_calculation
  • ColocalizationMeasurement
  • ColocalizationMeasurementParameters
  • Compactness
  • ComponentBoundingBox
  • ComponentsInfo
  • ComponentsNumber
  • CorrelationEnum
  • Diameter
  • DiameterOld
  • DistanceMaskROI
  • DistanceMaskROIParameters
  • DistancePoint
  • DistanceROIROI
  • DistanceROIROIParameters
  • FirstPrincipalAxisLength
  • GetROIAnnotationType
  • GetROIAnnotationTypeParameters
  • Haralick
  • HaralickEnum
  • HaralickParameters
  • MEASUREMENT_DICT
  • MaximumPixelBrightness
  • MeanPixelBrightness
  • MeasurementProfile
  • MeasurementResult
  • MedianPixelBrightness
  • MinimumPixelBrightness
  • Moment
  • PixelBrightnessSum
  • ProhibitedDivision
  • ROINeighbourhoodROI
  • ROINeighbourhoodROIParameters
  • RimPixelBrightnessSum
  • RimVolume
  • SecondPrincipalAxisLength
  • SettingsValue
  • Sphericity
  • SplitOnPartParameters
  • SplitOnPartPixelBrightnessSum
  • SplitOnPartVolume
  • StandardDeviationOfPixelBrightness
  • Surface
  • ThirdPrincipalAxisLength
  • Volume
  • VoxelSize
  • Voxels
  • double_normal()
  • empty_fun()
  • hash_fun_call_name()
  • iterative_double_normal()

PartSegCore.analysis.algorithm_description

class PartSegCore.analysis.algorithm_description.AnalysisAlgorithmSelection(**data)

Bases: AlgorithmSelection

Register for segmentation method visible in PartSeg ROI Analysis.

model_config: ClassVar[ConfigDict] = {'extra': 'forbid'}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].